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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54928.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  89/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.26.1
:476 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   393->467 2kklA PDBj 2e-09 38.7 %
:RPS:PDB   387->475 2affA PDBj 4e-17 28.1 %
:RPS:SCOP  387->475 1r21A  b.26.1.2 * 5e-18 28.1 %
:HMM:SCOP  341->474 1g3gA_ b.26.1.2 * 2.7e-28 33.6 %
:RPS:PFM   4->116 PF12401 * DUF3662 2e-20 43.4 %
:RPS:PFM   406->467 PF00498 * FHA 2e-07 53.2 %
:HMM:PFM   5->118 PF12401 * DUF3662 1.3e-41 38.6 114/116  
:HMM:PFM   405->466 PF00498 * FHA 6e-19 41.9 62/68  
:BLT:SWISS 393->467 Y1858_MYCBO 6e-09 38.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54928.1 GT:GENE BAD54928.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(69650..71080) GB:FROM 69650 GB:TO 71080 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD54928.1 LENGTH 476 SQ:AASEQ MGIVSRFERRLQGAVGDVFARVFGGSVVPQEVEAALQREAADNVQDLGGGHLLAPNSYVITINSSDHQQLDADHDLTTRAFAKHLQDYIRDQGWQTYGEVHVAFEASPTLHTGQFRASGRVDPDVGRRATPARSPEPTPPRPANPQPGAGPMTQNSGYDPSREPAESDPRNRGYAPPPAGRPAAPQNGAYRDEYARGGAPYPAGSDYRAPESQQGYGDYQNGYDYQQGAPGYGQPGYDQQGGYGRPGYGEPGYDQQGGQQGYSDQGYGQPGYGEPGYGQQGAGYGQPGYDQPGYGQQPGYGDQGYAEPGYGQQGYGQPGYGQQGGRQGYAEPAYGEPGYAEPGYGQDEQAGYGQGYAQQPGYGQQQPGYSAPAYGGAATGSGYSATLQLDDGSGRTYQLREGSNIIGRGQDAHFRLPDTGVSRRHIEVRWDGQTAMLSDLGSTNGTLVNGSPVQDWQLADGDVIRAGHSEILIRIV GT:EXON 1|1-476:0| BL:SWS:NREP 1 BL:SWS:REP 393->467|Y1858_MYCBO|6e-09|38.7|75/162| SEG 127->151|rratparspeptpprpanpqpgagp| SEG 169->189|prnrgyapppagrpaapqnga| SEG 213->386|qqgygdyqngydyqqgapgygqpgydqqggygrpgygepgydqqggqqgysdqgygqpgygepgygqqgagygqpgydqpgygqqpgygdqgyaepgygqqgygqpgygqqggrqgyaepaygepgyaepgygqdeqagygqgyaqqpgygqqqpgysapayggaatgsgysat| BL:PDB:NREP 1 BL:PDB:REP 393->467|2kklA|2e-09|38.7|75/140| RP:PDB:NREP 1 RP:PDB:REP 387->475|2affA|4e-17|28.1|89/98| RP:PFM:NREP 2 RP:PFM:REP 4->116|PF12401|2e-20|43.4|113/116|DUF3662| RP:PFM:REP 406->467|PF00498|2e-07|53.2|62/68|FHA| HM:PFM:NREP 2 HM:PFM:REP 5->118|PF12401|1.3e-41|38.6|114/116|DUF3662| HM:PFM:REP 405->466|PF00498|6e-19|41.9|62/68|FHA| RP:SCP:NREP 1 RP:SCP:REP 387->475|1r21A|5e-18|28.1|89/100|b.26.1.2| HM:SCP:REP 341->474|1g3gA_|2.7e-28|33.6|134/164|b.26.1.2|1/1|SMAD/FHA domain| OP:NHOMO 99 OP:NHOMOORG 89 OP:PATTERN -------------------------------------------------------------------- ---1211111111111111-111111111111111111221111111111111111-1111111111111111111111---------------------------------------------------------21121---1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------43--------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 90 STR:RPRED 18.9 SQ:SECSTR ##################################################################################################################################################################################################################################################################################################################################################################################################EcTTccEEEEEEccccEEEEEccTTccEEcccTTcccccEEEEEccccEEEEEcccccccEETTEEcccEEEcTTcEEEETTEEEEEEEc DISOP:02AL 64-391| PSIPRED ccHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHccEEEEccEEEcccEEEEEcccccHHHHcccccHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEccccEEEEEEcccccEEEccHHHccEEEEEEEcccEEEEEEccccccEEEccEEcccEEEccccEEEEccEEEEEEEc //