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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54929.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  39/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:210 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->121 1zk8B PDBj 1e-05 24.5 %
:RPS:PDB   1->55 3e7qB PDBj 4e-07 20.0 %
:RPS:SCOP  14->57 1jt0A1  a.4.1.9 * 8e-09 22.7 %
:RPS:SCOP  98->200 1zk8A2  a.121.1.1 * 6e-09 19.1 %
:HMM:SCOP  9->85 2gfnA1 a.4.1.9 * 4.5e-13 33.8 %
:HMM:SCOP  88->201 1zk8A2 a.121.1.1 * 2.8e-20 29.5 %
:HMM:PFM   19->65 PF00440 * TetR_N 4.6e-13 44.7 47/47  
:BLT:SWISS 1->113 SLMA_VIBFM 6e-04 29.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54929.1 GT:GENE BAD54929.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(71532..72164) GB:FROM 71532 GB:TO 72164 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD54929.1 LENGTH 210 SQ:AASEQ MTTSQRPRRYHHGDLRNALVRAAAELAETGGPEAVTVRAAARCVGVTPTAAYRHFTNHEQLLRAAQEQAQRSLFAAMQEALALLPPDAAPVDRLAAVGRGYITFAQREPGLFRTAFCPNEENSGPQDWQAPAFQLLSSLLDELVEVGYTDPAQRPDAEYAAWAAVHGMAGLIVDKAVRHLGTQEREAAIDRTLEVVRLGLATGPKATPGN GT:EXON 1|1-210:0| BL:SWS:NREP 1 BL:SWS:REP 1->113|SLMA_VIBFM|6e-04|29.8|104/196| SEG 59->71|eqllraaqeqaqr| SEG 80->97|alallppdaapvdrlaav| SEG 135->146|llsslldelvev| BL:PDB:NREP 1 BL:PDB:REP 19->121|1zk8B|1e-05|24.5|98/175| RP:PDB:NREP 1 RP:PDB:REP 1->55|3e7qB|4e-07|20.0|55/210| HM:PFM:NREP 1 HM:PFM:REP 19->65|PF00440|4.6e-13|44.7|47/47|TetR_N| RP:SCP:NREP 2 RP:SCP:REP 14->57|1jt0A1|8e-09|22.7|44/71|a.4.1.9| RP:SCP:REP 98->200|1zk8A2|6e-09|19.1|94/105|a.121.1.1| HM:SCP:REP 9->85|2gfnA1|4.5e-13|33.8|77/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 88->201|1zk8A2|2.8e-20|29.5|105/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 41 OP:NHOMOORG 39 OP:PATTERN -------------------------------------------------------------------- ----11---------------1--------------1---------11---------------1-----1----------------------------------------------------------------------------1--1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-------11----------------------1-11------------------------12-----11---------------------------------------------------------------------------------1111--111--1111-211--1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 208 STR:RPRED 99.0 SQ:SECSTR ccTccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHHHHHHHHTTTTHHcccccHHHHHHHHHHHHHHHHHHTcHHHTTcH## DISOP:02AL 1-17, 203-210| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccc //