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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54933.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  108/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.1.5
:431 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   61->125 2e6jA PDBj 2e-04 15.4 %
:RPS:SCOP  59->126 1evuA3  b.1.5.1 * 2e-04 20.6 %
:RPS:PFM   189->234 PF01882 * DUF58 5e-08 52.2 %
:HMM:PFM   187->272 PF01882 * DUF58 1e-19 38.4 86/86  
:HMM:PFM   56->94 PF01345 * DUF11 1.9e-06 38.5 39/76  
:BLT:SWISS 185->234 Y1516_MYCBO 2e-05 44.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54933.1 GT:GENE BAD54933.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(77294..78589) GB:FROM 77294 GB:TO 78589 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD54933.1 LENGTH 431 SQ:AASEQ MVVSGRLVALAALLALGVTVLLPSVTGVVLATLVLVAAVLADLAAVARPRDLRLERPALTTVRLGRRTEVELTVVNSGSRTARGVLWDDWPAGAGVENRTHAIDLAPNTKVRLRTALTPVRRGDRTAGPVTLRLFGPLGLAGVQTRHAVPARVRALPAFRSEYLLRSKVQRLQHLEGRNVANTRGQGSEFDSFREYVAGDDVRAIDWRATARATDVLVRTWRPERNRHVLMVLDSGRVGAGRVGAGTRLDAAIEAALLLGGLAAAAGDTVDLLAYDRTVRTEVRGIAGNRLQPQLMHALAGLTPALADTDAAGLVRAVLERARRRCLVVLFTGLDAAVVEQNLLPVLPVLTRRHRVLVVSVVDPEIAAAAATRDTLADLYTAAAAESALAERDLVRESLRRKGVAVVSAAPDRLPGALADEYLELKQSGSL GT:EXON 1|1-431:0| BL:SWS:NREP 1 BL:SWS:REP 185->234|Y1516_MYCBO|2e-05|44.0|50/317| TM:NTM 2 TM:REGION 1->23| TM:REGION 27->48| SEG 7->22|lvalaallalgvtvll| SEG 25->54|vtgvvlatlvlvaavladlaavarprdlrl| SEG 236->246|grvgagrvgag| SEG 249->274|ldaaieaalllgglaaaagdtvdlla| SEG 311->330|aaglvravlerarrrclvvl| SEG 367->393|aaaaatrdtladlytaaaaesalaerd| RP:PDB:NREP 1 RP:PDB:REP 61->125|2e6jA|2e-04|15.4|65/112| RP:PFM:NREP 1 RP:PFM:REP 189->234|PF01882|5e-08|52.2|46/86|DUF58| HM:PFM:NREP 2 HM:PFM:REP 187->272|PF01882|1e-19|38.4|86/86|DUF58| HM:PFM:REP 56->94|PF01345|1.9e-06|38.5|39/76|DUF11| RP:SCP:NREP 1 RP:SCP:REP 59->126|1evuA3|2e-04|20.6|68/100|b.1.5.1| OP:NHOMO 115 OP:NHOMOORG 108 OP:PATTERN -------------------------------------------------------------------- ----1---------21111-11--1111111111111----1111-1-122-111--1----1----1111-----------------111------------1-11--1-------------------1---1-111111---1-1--1--------------1--111----------------------------------------1--------------------1-----------------------------------------------------------------------------------------------------------------------1-----------------------2-11---------1-----------------------1------1--1------11-1----111------1------------------------------------------------11-1------------------------------111-------------------1-----------------------------------------------21----------------------------------1--1--1---------------------------------------------------------------------------------------------------------------------1----------1----------------------------1-1111-2111----2111------------------------11------------------------------1---------------------------------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 65 STR:RPRED 15.1 SQ:SECSTR ############################################################EEEccccEEEEEEEEEcccccEEEEEcccccHHHHHcEEEccEEEcTTcccEEEEEEcccccEEE################################################################################################################################################################################################################################################################################################################## DISOP:02AL 168-187| PSIPRED cEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEcccEEEEEEEEEEccccEEEEEEEEcccccccccccccEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEccEEEEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccHHHHHEEcccEEEEEEEcccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHccc //