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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54959.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  7/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->72 2eh3A PDBj 6e-07 42.2 %
:RPS:PDB   28->169 3btiB PDBj 4e-11 11.8 %
:RPS:SCOP  26->78 1z77A1  a.4.1.9 * 2e-11 30.2 %
:HMM:SCOP  20->95 2fd5A1 a.4.1.9 * 1.6e-14 43.4 %
:HMM:SCOP  104->214 1rktA2 a.121.1.1 * 1.6e-06 28.8 %
:HMM:PFM   31->77 PF00440 * TetR_N 3e-15 42.6 47/47  
:HMM:PFM   72->127 PF05227 * CHASE3 0.00021 25.0 56/138  
:BLT:SWISS 30->72 FADR_BACSU 7e-05 39.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54959.1 GT:GENE BAD54959.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(108359..109012) GB:FROM 108359 GB:TO 109012 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD54959.1 LENGTH 217 SQ:AASEQ MQRKAGSARQLPRGRHGLPREQVIASQRDRILDAMADAMAAEGYVGTSVAAVLKRAGVSRETFYEQFRSKEDCFEAAYERAVERLVARIAAAAQRRADAPVGRPDLERMERLLDAYIEGLAEDPAYARLYLVEVYAVGSKALAKRAQLQASFVELIAEVLDARTDAQRFACVAFAAAVSAMVTARIAADDLDGLLRLREPLLDLVLRGGAVYGGAPG GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 30->72|FADR_BACSU|7e-05|39.5|43/194| SEG 80->101|raverlvariaaaaqrradapv| SEG 170->207|acvafaaavsamvtariaaddldgllrlreplldlvlr| BL:PDB:NREP 1 BL:PDB:REP 28->72|2eh3A|6e-07|42.2|45/170| RP:PDB:NREP 1 RP:PDB:REP 28->169|3btiB|4e-11|11.8|136/186| HM:PFM:NREP 2 HM:PFM:REP 31->77|PF00440|3e-15|42.6|47/47|TetR_N| HM:PFM:REP 72->127|PF05227|0.00021|25.0|56/138|CHASE3| RP:SCP:NREP 1 RP:SCP:REP 26->78|1z77A1|2e-11|30.2|53/75|a.4.1.9| HM:SCP:REP 20->95|2fd5A1|1.6e-14|43.4|76/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 104->214|1rktA2|1.6e-06|28.8|111/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 10 OP:NHOMOORG 7 OP:PATTERN -------------------------------------------------------------------- ----2----------------1----------1---3------------------------------1----------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 155 STR:RPRED 71.4 SQ:SECSTR ##############HHHHHHTccHHHHHHHHHHHHHHHHHHcccccccHHHHHHTTTcccTTTTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcTTcccHHHHHHHHHHHHHHccccTTTHHHHHHHTTcccccTTcTTTHHHHHHHHHHHHHHHHHHHHTTcc################################################ DISOP:02AL 1-29, 213-217| PSIPRED cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccc //