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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54960.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  858/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:255 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   78->255 1uayA PDBj 6e-61 65.0 %
:RPS:PDB   23->255 1a27A PDBj 1e-25 18.5 %
:RPS:SCOP  23->255 1pwxA  c.2.1.2 * 6e-28 19.0 %
:HMM:SCOP  1->249 1zemA1 c.2.1.2 * 8.9e-63 38.4 %
:RPS:PFM   36->172 PF00106 * adh_short 2e-05 37.5 %
:HMM:PFM   7->176 PF00106 * adh_short 6.2e-30 30.3 155/167  
:BLT:SWISS 23->254 HCD2_RAT 2e-58 52.4 %
:PROS 148->176|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54960.1 GT:GENE BAD54960.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 109125..109892 GB:FROM 109125 GB:TO 109892 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD54960.1 LENGTH 255 SQ:AASEQ MEISGSAAIITGGASGLGAATAKRFAELGATVFGLDIPASIERAGDNVPAGVTLIPADVTSNDEVAAAVAQVVESGAPLRIVVNCAGVGWAGRILSKNGPHDLELFRTVITVNLLGTFNVMRLAADAIAKTDPVDEYGQRGVVINTASVAAFEGQIGQIAYSASKGGVHGMTVPAARDLAQFGIRVNTIAPGIIDTPMLAGVTEEYRKGLEAGVPFPSRLGRPDEYAQLSQYIVEHDYLNGETIRMDGALRMAPR GT:EXON 1|1-255:0| BL:SWS:NREP 1 BL:SWS:REP 23->254|HCD2_RAT|2e-58|52.4|231/261| PROS 148->176|PS00061|ADH_SHORT|PDOC00060| SEG 3->22|isgsaaiitggasglgaata| SEG 65->73|vaaavaqvv| BL:PDB:NREP 1 BL:PDB:REP 78->255|1uayA|6e-61|65.0|177/241| RP:PDB:NREP 1 RP:PDB:REP 23->255|1a27A|1e-25|18.5|222/285| RP:PFM:NREP 1 RP:PFM:REP 36->172|PF00106|2e-05|37.5|120/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->176|PF00106|6.2e-30|30.3|155/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 23->255|1pwxA|6e-28|19.0|221/252|c.2.1.2| HM:SCP:REP 1->249|1zemA1|8.9e-63|38.4|237/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 6581 OP:NHOMOORG 1078 OP:PATTERN --1--21453534321-5-1---15--3132522---------11-31--21--11----224131-1 6AA3C2-211523-BOH99-9Q22IZ98999EOTXVIPpl2L5f7B742442EBA5441199K2889GJD7-111---1152L11111343315221--417137D4F261111111-111111232113211211AAA881117525774311111---112131654921-11111-11-164467341B4CAABABDBCABCBDDBA8BBBABBC5BBBG764554439H44444433444444376668419266241112444354335564443332434233111111111113444444334443111111111323468555444444553442575233114422264112223333333512524G8881111163XIL524GBHEBBDDDACDDDDC-9BI98R8DHPH1ODD9HDHRHONOGL69688FB58B67722222222BA8337361111111111112122-22-12212111128RV937KGCCPKKNLK8BABAGGNMCCCC69YFVEZPK33889D5889ABG7HB5661112531111111113E86373431111232221454283354444359321211111111111111111111111556642677585153334356555454634541-2234611-11138A84846773655566-776855566675555665578944358532233434423332385644435113777777777771-14342226656258E8111414-1111122178AA839245A1DCBB6B9C478B6B977111111111123493333338367557787766632221122555433--------1-3----------1--------------2132143454182 1111449-521-257IIHBBDLCNNLGAC7C7BC9A5HBFAGECECE9DIHOPNABC56A7A314-11-3--2-2------33354-2-599I5F79773725A97-295V6C3762312136485241A94-4451324723442532363343134A77337A57638876762472M111385A7L88378A5545 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 91.4 SQ:SECSTR ######################HHHHTcTTccEEEEEEHHHHHHHHTTccTTcEEEEEccTTcHHHHHHHHHTcTTccccEEEEcccccccccGGGccHTccHHHHHHHHHHHTHHHHHHHHHHHHHHHHGTHHHGGHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccccHHHHHHHccHHHHHcccHHHHHHHHHHHHHccccccEEEcccTTHHHHHT DISOP:02AL 255-256| PSIPRED ccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEEccccccccc //