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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54967.1
DDBJ      :             putative glycerophosphoryl diester phosphodiesterase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  527/915 : Eukaryota  82/199 : Viruses  1/175   --->[See Alignment]
c.1.18
:255 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->245 2pz0B PDBj 4e-29 35.3 %
:RPS:PDB   5->247 3ch0A PDBj 2e-32 18.8 %
:RPS:SCOP  8->252 1zccA1  c.1.18.3 * 6e-44 29.2 %
:HMM:SCOP  6->253 1t8qA_ c.1.18.3 * 3.9e-64 42.6 %
:RPS:PFM   13->245 PF03009 * GDPD 6e-28 38.2 %
:HMM:PFM   13->246 PF03009 * GDPD 1.4e-49 32.5 231/255  
:BLT:SWISS 11->245 GLPQ_BACSU 8e-29 35.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54967.1 GT:GENE BAD54967.1 GT:PRODUCT putative glycerophosphoryl diester phosphodiesterase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 115076..115843 GB:FROM 115076 GB:TO 115843 GB:DIRECTION + GB:PRODUCT putative glycerophosphoryl diester phosphodiesterase GB:PROTEIN_ID BAD54967.1 LENGTH 255 SQ:AASEQ MSQGNRAPFVVAHRGASAALPEHTLAAYELALQEGADGVECDVRLTRDGHLVCVHDRTVDRTSSGTGPVSEMTLAELKALDFGADGTPASVLTLSELIELVLDWRSRPTKLFIETKHPVRYGALVENKVLAELQRYGIATPASADHSRAVVMSFAATAVWRIRRAAPLLPTVLLGESSRYLGGGAATTVGATAVGPSVKTLREHPELVDKAAAAGRATYCWTVDEPADVRLCADLGVSWVATNHPGRTKALLAAA GT:EXON 1|1-255:0| BL:SWS:NREP 1 BL:SWS:REP 11->245|GLPQ_BACSU|8e-29|35.1|231/293| SEG 182->195|gggaattvgatavg| BL:PDB:NREP 1 BL:PDB:REP 10->245|2pz0B|4e-29|35.3|224/243| RP:PDB:NREP 1 RP:PDB:REP 5->247|3ch0A|2e-32|18.8|240/265| RP:PFM:NREP 1 RP:PFM:REP 13->245|PF03009|6e-28|38.2|220/241|GDPD| HM:PFM:NREP 1 HM:PFM:REP 13->246|PF03009|1.4e-49|32.5|231/255|GDPD| GO:PFM:NREP 2 GO:PFM GO:0006071|"GO:glycerol metabolic process"|PF03009|IPR004129| GO:PFM GO:0008889|"GO:glycerophosphodiester phosphodiesterase activity"|PF03009|IPR004129| RP:SCP:NREP 1 RP:SCP:REP 8->252|1zccA1|6e-44|29.2|226/240|c.1.18.3| HM:SCP:REP 6->253|1t8qA_|3.9e-64|42.6|242/0|c.1.18.3|1/1|PLC-like phosphodiesterases| OP:NHOMO 1107 OP:NHOMOORG 631 OP:PATTERN ---1211--------13111-11-----11-1--------------1-1-----11-111-------- --21111111111112211-11111111111111111211-1211721122121211---13112155641---------1-2--1--1141---------1-1---31---------------------------11111---11211-11-----------1---2211------------212----1224555555554555554525533554222322222222245333333333333332533341211221112122--221-1322111--------11---------------------------------1-3-112222222223-1--12212--1-211------1-11--111-11-3-13221-1----1---------------------1---------211-533332143211--2111--1---1-211111111-111-121------------------------------1-11111111111111-2222111122222221-2222--22211222213-3-11-1---1------------121211111--11111-1-1----2-22-21--1---------------------------11-11-1-1-1111-122----2---121-----1--------22232112222222222-222222222222222222223233112222222222222222222212222--233333323333---111111--1--2211----11-1-11-11-111111----2233432322311122333-11111111-2--22222232222--22222333------1-111111-----1--2-----------1--11111-111----1-1--11111--- ----11--421--1-1--1-1-------------------------------------------------1----11--1---------121-1114221121111--11214211----11111--1-121-111----1111-11---11-1---1---4131-2----111--42------113311241-1121- -------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 97.3 SQ:SECSTR ####cTTcEEEETTTTTTTccTTcHHHHHHHHHHTccEEEEEEEEcTTccEEEcccccccTTTcETTEEGGGcHHHHTTccccccTTccccccccccHHHHHHHHccccEEEEEEcccGGGcTTTcccHHHHHHHHHHHHHHTTcGGGEEEEEccHHHHHHHHHcTTcEEEEEEcccccHHHHHTTccccccEEEEcGGGGGGccHHHHHHHHHTTEEcccccccHHHHHHHHHHTccEEEEccGGGHHHHH### DISOP:02AL 1-5, 8-9| PSIPRED ccccccccEEEEEccccccccccHHHHHHHHHHccccEEEEEEEEccccEEEEEccccHHHHccccccEEcccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHccccHHHcccccEEEEEccHHHHHHHHHHHcccEEEEEEEccccccHHHHHHcccEEEEccHHHHHccHHHHHHHHHcccEEEEEEcccHHHHHHHHHccccEEEEccHHHHHHHHHcc //