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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54983.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  652/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.1.33d.58.29
:618 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   189->330 3i5aA PDBj 3e-22 43.0 %
:BLT:PDB   338->575 2r6oA PDBj 8e-36 41.8 %
:RPS:PDB   132->291 3btaA PDBj 6e-43 7.0 %
:RPS:PDB   344->584 2basA PDBj 1e-50 22.7 %
:RPS:SCOP  191->336 1w25A3  d.58.29.2 * 5e-35 34.9 %
:RPS:SCOP  344->579 2basA1  c.1.33.1 * 3e-55 23.8 %
:HMM:SCOP  191->337 1w25A3 d.58.29.2 * 3.6e-47 49.7 %
:HMM:SCOP  342->591 2basA1 c.1.33.1 * 3.7e-66 46.1 %
:RPS:PFM   189->329 PF00990 * GGDEF 1e-26 47.5 %
:RPS:PFM   342->579 PF00563 * EAL 2e-51 48.9 %
:HMM:PFM   344->579 PF00563 * EAL 6.3e-64 45.5 231/236  
:HMM:PFM   186->330 PF00990 * GGDEF 1.1e-38 43.4 145/161  
:BLT:SWISS 186->587 Y091_CAUCR 3e-63 40.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54983.1 GT:GENE BAD54983.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 129005..130861 GB:FROM 129005 GB:TO 130861 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD54983.1 LENGTH 618 SQ:AASEQ MSRLFSVRGIGARGDTRTRVRAASALATAMVMARTTGAFYVMGGVLGLVITAVAPGDEGNRPLVGTAAAIALALGLTLLAWGPRLPHGIHHGYVAIATVLITIAVYAFPNTVGAISLAAFYVFIACDAALFFRWPQAAAHIAFAVVLCLWSLPTRDLPWWSGIIPAGVTFGVGVVVGILTRMASEADIDVLTGLLNRRGFDRALNTAIEHATRSGQGLALVLVDLDRFQKINDHLGHRAGDAVLQRVADTWSKLLAPDQRLARYGGDAFALLLPNTTEQAAILLTEQLRAAVTTGCSAGVTSWQPGESGSLLVSRADVGLYRAKQAGRNRTVLESSRQLPLAVELREAIDRGALDVHYQPIVSLTEGGGKAVGVEALLRWSSSAQPDVTTEGLIRVAEEYDLIADLDELVLRRACADAARLQETFAQLDLTLNVNVSGLELAEAGYADRVSDILSATGWPADQLVLEVTESELAAESQTAIANLHTLRERGVRIAIDDFGTGYSSLSRLATLPSDILKVDQSFVAAIRSDSPAPPLLGVIAALSNALDLQVIAEGVETEYQAAVLTELGFALAQGYHYSDSHPVSELINDLNYGQGRVGSGQSERADTVASNGWVPLS GT:EXON 1|1-618:0| BL:SWS:NREP 1 BL:SWS:REP 186->587|Y091_CAUCR|3e-63|40.8|395/809| TM:NTM 5 TM:REGION 37->59| TM:REGION 62->84| TM:REGION 99->121| TM:REGION 134->156| TM:REGION 166->188| SEG 16->34|trtrvraasalatamvmar| SEG 63->80|lvgtaaaialalgltlla| SEG 167->177|gvtfgvgvvvg| BL:PDB:NREP 2 BL:PDB:REP 189->330|3i5aA|3e-22|43.0|142/319| BL:PDB:REP 338->575|2r6oA|8e-36|41.8|232/253| RP:PDB:NREP 2 RP:PDB:REP 132->291|3btaA|6e-43|7.0|157/1277| RP:PDB:REP 344->584|2basA|1e-50|22.7|229/393| RP:PFM:NREP 2 RP:PFM:REP 189->329|PF00990|1e-26|47.5|141/160|GGDEF| RP:PFM:REP 342->579|PF00563|2e-51|48.9|233/236|EAL| HM:PFM:NREP 2 HM:PFM:REP 344->579|PF00563|6.3e-64|45.5|231/236|EAL| HM:PFM:REP 186->330|PF00990|1.1e-38|43.4|145/161|GGDEF| RP:SCP:NREP 2 RP:SCP:REP 191->336|1w25A3|5e-35|34.9|146/162|d.58.29.2| RP:SCP:REP 344->579|2basA1|3e-55|23.8|227/257|c.1.33.1| HM:SCP:REP 191->337|1w25A3|3.6e-47|49.7|147/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 342->591|2basA1|3.7e-66|46.1|243/0|c.1.33.1|1/1|EAL domain-like| OP:NHOMO 10710 OP:NHOMOORG 660 OP:PATTERN -------------------------------------------------------------------- JA2BC---111---27522-2L44-122222-D7775I75EIFd*-------768-----BA3-G4L5543----1----H27CEPAB--------------------1----------------11111111151BCC9911196rUVJNN233HH---4--FQ9-FFK4------------T8D64781AC3888886782888888-33334888696I3ON444454DG-1111111111111111111--2---2----33------1--1-----------------------------------------------5BA8K444665585B3RAA7687947--7AB87KIGC5656B533442--C4A9CC71111137cVVB9JeWPYa68BB6AB7AAJ-aYQUUCSTCY62NUUVYaSZcgKIaHCID4B3DGAB9C6--------GHH5-sEX11111111222222222222222121111-BBID5HGE52PLMNOOJ9998JJZiDDDD7CPXbHSLe-2TSPdJeMOg13oB8YWYVPajgQ-------99HQot5JRILLPRClWNKP1KHLYFMFZR6666C665K997----------------YLUXG43phKgofuVrZu*srssovhtqpfkjiaeyv---EgJj------LPKC5UDPPPMPMPOPM-MPNRPJIOOONMNMOONORQTNIJ---GBDHHHGGGGFHGGHHGFDACAGF1-H56666645666---V-1-1-JMKLGAyLw---------------989993913-LdbbdZcjggldbbcXZbd-----2---dOWYTeeddcfgg**RSUXWXUMNR3333--d2DD97IJ1111111-819-------------------------8745668666-1- -----------------------------------------------------------------------------------------------1--------------------------------------------------------------3----7---------D2----------2--D-----9---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 459 STR:RPRED 74.3 SQ:SECSTR ###################################################################################################################################EEEEEcccccccccEEEEEE#ETTEEEEcccccGGGccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTEEEccGGGcccGGGGEEEcccccccccHHHHHHcTTTHHHHHHHHHHHHcEEEEcccHHHHHHHTccccccccGGGGGGccccHHHHHHHHHHHHHHHTccccEEccccGGGccHHHHHHHHTTTTEEEEEEEEEEccccTccEEEEEEEEEEEETTEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHTTccTGTTTcTcEEEEccHHHHGGTTHHHHHHHHHHHHTTccGGGEEEEEccTTccccHHHHHHHHHHHHTTTcEEEEEEETTTcccHHHHHHHcccEEEEEcTTTcccHHHHTHHHHHHHHHHHHHHHTcEEEEEccccHHHHHHHHHTTEEEEccTTTccccccccccccH########################### DISOP:02AL 1-3, 592-611| PSIPRED ccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEEEEEEHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccEEEEEEEEEEEEccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHcccHHHHHHHHHHHHcccccccEEEEEEHHHHHccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEcHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccEEEHHHccccccHHHHHHHHHcccccccccccccccccccccccccc //