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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54986.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  391/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:104 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->103 1s7bB PDBj 1e-08 30.8 %
:HMM:SCOP  4->105 1s7bA_ f.39.1.1 * 5.8e-12 26.5 %
:RPS:PFM   2->93 PF00893 * Multi_Drug_Res 5e-10 41.3 %
:HMM:PFM   1->93 PF00893 * Multi_Drug_Res 1.6e-24 41.9 93/93  
:BLT:SWISS 1->102 SUGE_PROVU 7e-25 47.1 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54986.1 GT:GENE BAD54986.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 133525..133839 GB:FROM 133525 GB:TO 133839 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD54986.1 LENGTH 104 SQ:AASEQ MSWLLLVISGVLEAVWATALGRSEGFTRLVPSVVFFVALAGSMAGLAWAMRDLPVGTAYAVWVGIGAVGTVAYAMATGTEPIAWTKILFLTMIIGGVVGLKMVG GT:EXON 1|1-104:0| BL:SWS:NREP 1 BL:SWS:REP 1->102|SUGE_PROVU|7e-25|47.1|102/104| TM:NTM 4 TM:REGION 1->23| TM:REGION 27->49| TM:REGION 55->77| TM:REGION 82->104| BL:PDB:NREP 1 BL:PDB:REP 13->103|1s7bB|1e-08|30.8|91/107| RP:PFM:NREP 1 RP:PFM:REP 2->93|PF00893|5e-10|41.3|92/93|Multi_Drug_Res| HM:PFM:NREP 1 HM:PFM:REP 1->93|PF00893|1.6e-24|41.9|93/93|Multi_Drug_Res| GO:PFM:NREP 1 GO:PFM GO:0016021|"GO:integral to membrane"|PF00893|IPR000390| HM:SCP:REP 4->105|1s7bA_|5.8e-12|26.5|102/106|f.39.1.1|1/1|Multidrug resistance efflux transporter EmrE| OP:NHOMO 553 OP:NHOMOORG 399 OP:PATTERN ----------------------------111---------------1---11---------------- ----2-------1-111----2--11-----1-1112111----11-1211-222--2--11--1111221---------1-1------11---------11-1-1-1-1--------------122112-111211--------------------111---------1-------------111--------4444434333443441-33-2413111111-2222212-1--------------1111---1------1-11--11----1-111------------------------------------------------1----------1111---------1----2211-------------1-11111-----1-21112132121111-1111112-11111111111-2---1111222122-----22122-1--------------111--------------11----1----1-11---21122214222132211111111111112111211------21---1---1-11--31----------1----121------2-1-------1-2---22-2311-------------1------------1111-11---12--1111-1----1-1--1-----1---------11-11121111111211-1111111111112111111311--2221111-11-1-1111142111111-1-222222212222---2-----111112--2----1--------1-1121511-----11111221211111-----------------11111-1---2211111111--------1111-------------------------------------------------11 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------12---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 91 STR:RPRED 87.5 SQ:SECSTR ############HHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHTccccccccccHHHHHHHHHHHHHTTTTTccccccccHHHHHHHHHHHHHHHHH# DISOP:02AL 104-105| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHc //