[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54996.1
DDBJ      :             putative two-component system response regulator
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  676/915 : Eukaryota  18/199 : Viruses  0/175   --->[See Alignment]
c.23.1
:147 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->144 1jlkB PDBj 6e-35 49.3 %
:RPS:PDB   8->133 3cnbC PDBj 2e-18 26.9 %
:RPS:SCOP  6->133 1a0oA  c.23.1.1 * 2e-22 27.5 %
:HMM:SCOP  2->147 1k66A_ c.23.1.1 * 3.3e-32 35.6 %
:RPS:PFM   10->131 PF00072 * Response_reg 2e-14 44.5 %
:HMM:PFM   10->131 PF00072 * Response_reg 1.6e-24 35.7 112/112  
:BLT:SWISS 7->144 RCP1_SYNY3 2e-34 49.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54996.1 GT:GENE BAD54996.1 GT:PRODUCT putative two-component system response regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 144656..145099 GB:FROM 144656 GB:TO 145099 GB:DIRECTION + GB:PRODUCT putative two-component system response regulator GB:PROTEIN_ID BAD54996.1 LENGTH 147 SQ:AASEQ MTVPGQPIDILLVEDDPGDELMTREAFEDNKIGNTLHVAHDGQEALDFLYRQGEYAHAPRPDLILLDLNLPKYDGRQVLEKIKADPDLSHIPVVVLTTSAAEEDILRSYRLHANAYVTKPVDLDQFVAAIKQIDEFFVQVVRLPRTR GT:EXON 1|1-147:0| BL:SWS:NREP 1 BL:SWS:REP 7->144|RCP1_SYNY3|2e-34|49.3|138/147| BL:PDB:NREP 1 BL:PDB:REP 7->144|1jlkB|6e-35|49.3|138/139| RP:PDB:NREP 1 RP:PDB:REP 8->133|3cnbC|2e-18|26.9|119/123| RP:PFM:NREP 1 RP:PFM:REP 10->131|PF00072|2e-14|44.5|110/111|Response_reg| HM:PFM:NREP 1 HM:PFM:REP 10->131|PF00072|1.6e-24|35.7|112/112|Response_reg| GO:PFM:NREP 3 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| RP:SCP:NREP 1 RP:SCP:REP 6->133|1a0oA|2e-22|27.5|120/128|c.23.1.1| HM:SCP:REP 2->147|1k66A_|3.3e-32|35.6|146/149|c.23.1.1|1/1|CheY-like| OP:NHOMO 2576 OP:NHOMOORG 708 OP:PATTERN -----------------------12----1-1--1--1-----24--325424--------------- 34A22-------1111111-13--1211111121111---2746-1---21--1--41--123161233411111111-1--4-154333HA-3-----428244D4K65--------------1---2---1-2-IFFC9311F2KJMMJI778881222328A89GGO7331323333332K76--33-143555554553445344-2334354434341122222229A12222222222222222222-2122322112112233211111---1111111111-----------11111111111111--111---137526545565615336441332217-152213895352332411341-216587761----336682225665611111111112-77B7747B333134457757764433327113555424-2222222213322E34----------11-111--1--1--11111-121121---14331427111111681111-13762432--353D652343C62253844545---------175BG1B5642943GB4471CCADBAC4788C77C57-----------1--------24121--42-67C526347555545475564545656---5662------11--1211111111111-1111111111111111111111-1112212222222222222211111111-----------------111111221218915---------------33333241322765663442424245413-----1---34332455554545544878775661111--I---4444------------------------------------11---212121C1 --------------21111-------------------------------------1-----------------------------------1----1--1-------2-------------------------------------------------1--------------2--12------11---1----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 99.3 SQ:SECSTR cTTGEcccEEEEEcccHHHHHHHHHHHHHHcTTcEEEEEccHHHHHHHHHHTHHHHHTccccEEEEETTcTTccHHHHHHHHHTcTTTTTcEEEEEEccccHHHHHHHHHTTccEEEEccccHHHHHHHHHHHHHHEcTTccccGG# DISOP:02AL 1-5, 145-147| PSIPRED ccccccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHHcccccc //