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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54999.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  841/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13b.52.2
:266 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->153 1l9zH PDBj 3e-12 33.0 %
:BLT:PDB   143->261 1rp3E PDBj 8e-06 24.6 %
:RPS:PDB   54->262 3dxjF PDBj 2e-22 20.6 %
:RPS:SCOP  54->154 1aw8.1  b.52.2.1 * 1e-20 13.3 %
:RPS:SCOP  209->262 1ku3A  a.4.13.2 * 2e-10 24.1 %
:HMM:SCOP  17->114 1iw7F3 a.177.1.1 * 3.9e-27 34.7 %
:HMM:SCOP  117->196 1rp3A1 a.4.13.1 * 9e-16 42.9 %
:HMM:SCOP  174->265 1iw7F2 a.4.13.2 * 1.8e-13 28.3 %
:RPS:PFM   50->92 PF04542 * Sigma70_r2 6e-07 46.5 %
:RPS:PFM   213->260 PF04545 * Sigma70_r4 7e-05 39.6 %
:HMM:PFM   44->113 PF04542 * Sigma70_r2 6.1e-18 35.7 70/71  
:HMM:PFM   213->261 PF04545 * Sigma70_r4 8.8e-18 40.8 49/50  
:HMM:PFM   128->186 PF04539 * Sigma70_r3 8.6e-14 32.2 59/78  
:BLT:SWISS 24->260 RPOF_STRCO 5e-42 38.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54999.1 GT:GENE BAD54999.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 146138..146938 GB:FROM 146138 GB:TO 146938 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD54999.1 LENGTH 266 SQ:AASEQ MREEVTGGSTRAAAGGYQDLEPHFVELRALAEDDPRRRALREELIERCLPLAEHIARKFSGRGENFEDLLQIARVGMVAAVDRFDPTQGAPFLGFAVPTIMGEVRRHFRDHTWSVRVPRRLKELQATLNPAIETLTQRLGRMPKARELAEELGVDIAEVTQALVARNAYQTSSIDGSSGDDGESSAPALADTLGAEDPEFGTVENYLAVKPLIAALPEREQRVLVMRFFHSMSQEQIAQQIGCSQMQVSRILSRTLKSLREQALRD GT:EXON 1|1-266:0| BL:SWS:NREP 1 BL:SWS:REP 24->260|RPOF_STRCO|5e-42|38.9|234/287| SEG 36->49|rrralreeliercl| SEG 172->185|ssidgssgddgess| BL:PDB:NREP 2 BL:PDB:REP 51->153|1l9zH|3e-12|33.0|103/319| BL:PDB:REP 143->261|1rp3E|8e-06|24.6|118/235| RP:PDB:NREP 1 RP:PDB:REP 54->262|3dxjF|2e-22|20.6|209/349| RP:PFM:NREP 2 RP:PFM:REP 50->92|PF04542|6e-07|46.5|43/70|Sigma70_r2| RP:PFM:REP 213->260|PF04545|7e-05|39.6|48/49|Sigma70_r4| HM:PFM:NREP 3 HM:PFM:REP 44->113|PF04542|6.1e-18|35.7|70/71|Sigma70_r2| HM:PFM:REP 213->261|PF04545|8.8e-18|40.8|49/50|Sigma70_r4| HM:PFM:REP 128->186|PF04539|8.6e-14|32.2|59/78|Sigma70_r3| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 2 RP:SCP:REP 54->154|1aw8.1|1e-20|13.3|98/115|b.52.2.1| RP:SCP:REP 209->262|1ku3A|2e-10|24.1|54/61|a.4.13.2| HM:SCP:REP 17->114|1iw7F3|3.9e-27|34.7|98/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 117->196|1rp3A1|9e-16|42.9|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 174->265|1iw7F2|1.8e-13|28.3|92/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1820 OP:NHOMOORG 854 OP:PATTERN -------------------------------------------------------------------- 2111711111112134433-36223333333345557455422331122332232111113371654BCB611111112112712333----1------------11121111111122222221--1--------4555611154F795552456756567654447884344344444343---1122-33444444444344444334444444435443322222226422222222222222222222-1-2112-111----1111--1111111111111111111111111111111111111111111111111545323333333232443333334342242243334433343344542--415111111111111111111111111111111111-111121111111111111111111111111122222111111111111111111111111111----11-11111111111111-11111111111222211223211-122232321-12111-222111111--1-12113-1-212222222112-12111111111111111222222233111111131111111111111111111111111334232433233223333233222322323231--232111111132333333332333333-333332323333323322322233333233333333333333333132133223434443434431121111113223123331111111111111111111111111332222222222222222211111111113334444443323311111111111111112222111111111111211111-1---1--11----1-1--1112121112111211 -------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------11-1B111--4--4-3--21---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 213 STR:RPRED 80.1 SQ:SECSTR #################################################cccHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHH#### DISOP:02AL 1-21, 262-266| PSIPRED ccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHccccccccccEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc //