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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55005.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  298/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:270 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->108 1hw2A PDBj 5e-11 34.8 %
:RPS:PDB   9->171 2b7oB PDBj 6e-15 11.1 %
:RPS:SCOP  9->76 1e2xA1  a.4.5.6 * 5e-14 36.8 %
:HMM:SCOP  2->108 1v4rA1 a.4.5.6 * 7e-18 40.0 %
:RPS:PFM   15->74 PF00392 * GntR 1e-10 60.0 %
:HMM:PFM   13->74 PF00392 * GntR 5.4e-22 56.5 62/64  
:HMM:PFM   103->225 PF07729 * FCD 5.2e-12 31.6 117/125  
:BLT:SWISS 1->177 Y601_MYCBO 5e-57 66.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55005.1 GT:GENE BAD55005.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(152240..153052) GB:FROM 152240 GB:TO 153052 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55005.1 LENGTH 270 SQ:AASEQ MALQPVVKRSVSADVFEQIAAEVLSGERAPGSALPSERQLAEALGVSRPAVREALQRLAAAGLVAVRQGDTTTVLDYRRGAGLEILPRLLIRQGTLDPTVARSILEARLHNGPKVAELAAARAGDREALRHELNRCLDALARETEPVALQRHALAFWDHLVDAADSIVFRLMNNMLRAAYEPALEALAPLMTAEVGNVAGYRAIAEAVLAADPPAATAAARALLEPATTALIAALDAAAATSNTASATSNTAAGATPNTAGATPNTEEPS GT:EXON 1|1-270:0| BL:SWS:NREP 1 BL:SWS:REP 1->177|Y601_MYCBO|5e-57|66.9|175/240| SEG 178->194|aayepalealaplmtae| SEG 203->266|aiaeavlaadppaataaarallepattaliaaldaaaatsntasatsntaagatpntagatpnt| BL:PDB:NREP 1 BL:PDB:REP 17->108|1hw2A|5e-11|34.8|92/222| RP:PDB:NREP 1 RP:PDB:REP 9->171|2b7oB|6e-15|11.1|162/438| RP:PFM:NREP 1 RP:PFM:REP 15->74|PF00392|1e-10|60.0|60/64|GntR| HM:PFM:NREP 2 HM:PFM:REP 13->74|PF00392|5.4e-22|56.5|62/64|GntR| HM:PFM:REP 103->225|PF07729|5.2e-12|31.6|117/125|FCD| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 1 RP:SCP:REP 9->76|1e2xA1|5e-14|36.8|68/73|a.4.5.6| HM:SCP:REP 2->108|1v4rA1|7e-18|40.0|100/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 538 OP:NHOMOORG 299 OP:PATTERN -------------------------------------------------------------------- ----2---------2-122-2---1322222121112132---1-4------222-------1----21-------------4-------------------------------------------------------------1--------------------------------------2-----------------------1-2-------2-------11111-1--------------------------------------------------------------------------------------------2-1--------1-11-111-----------1-11--2----3-----------11-------------------11111111112----------1--2--14444343512---21-1-111-1--------1----1-----------------------------------1-111112112122------23------2111111--111-11--31311---1-----1-----------11-322---1-1-----2-2--12-1-----------------------------------11112111221223222111233121-311----1--------24211313332322233-3333222323322333333222221112222222222212122332233332-122222222222---1------------3----111-----11111111111---2-11113434222441342----------2222222222221211----------------------------------------------------------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 177 STR:RPRED 65.6 SQ:SECSTR HHHHTcccccccHHHHHHHHHHHHHHHTTccEcEEEEEccccccTccHHHHHHHHHHHHHHHHHHHHHTcEEEEEEccccccccccccccTTcccccccTTccccccHHHHcccTTHHHHHHHHHHHHHHHHHTcGGGcHHHHHHHHHHHHHccTTHHHHHHHHHHHHHHHHHHHHH############################################################################################# DISOP:02AL 1-11, 234-270| PSIPRED ccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHccEEEEEcccEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc //