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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55007.1
DDBJ      :             putative ABC transporter substrate-binding protein
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  353/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:554 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   58->333 2grvC PDBj 5e-21 30.5 %
:RPS:PDB   56->550 1dppA PDBj 7e-58 19.0 %
:RPS:SCOP  49->537 1xocA1  c.94.1.1 * 8e-59 18.6 %
:HMM:SCOP  49->552 1vr5A1 c.94.1.1 * 2.1e-82 30.2 %
:RPS:PFM   119->448 PF00496 * SBP_bac_5 7e-26 36.0 %
:HMM:PFM   113->466 PF00496 * SBP_bac_5 4.5e-61 26.1 345/372  
:BLT:SWISS 14->554 Y1311_MYCBO e-156 52.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55007.1 GT:GENE BAD55007.1 GT:PRODUCT putative ABC transporter substrate-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(153901..155565) GB:FROM 153901 GB:TO 155565 GB:DIRECTION - GB:PRODUCT putative ABC transporter substrate-binding protein GB:PROTEIN_ID BAD55007.1 LENGTH 554 SQ:AASEQ MRIRAATRIAAPVLALGMVLAACGGDSGQLTGENTIGASSDINPREPGELRDGGNLRLALTSFPATFNTHHVDSDGGVSQVLAATLPGTLESDAAGELTVDHDYFTDVQLTGTNPQQITYTINPAAVWSDGTPITWEDLRAQATALSGRDTAYQVAATQGYSRIEKVERGVDDRQAIVTMAQHYAEWQGLFNPLYPKATNETPEAFENLDREAPRVSGGPFMVTEIDRAQQRIVLSRNPRWWGETPKLETITYSVLDYTARLNALQNNELDSADVSGLDEVQAASQTPGLVVRRAPALRFSHMTFNGAPGSILEDPRLRVAISKAIDRQAIASALLNGLVADPKPLNNHLYLEGQKGYQDNAQAVAYDPEQAAAELDALGWKLNGDVREKDGRPLEIRNVMYQQQNWVQIAQIAQQNLAQVGVRLKIETYPGNGLFTDVIDPGNFDIANFVWMKSIFPLGALPQIYAYDPANPLSNKGRIGSPELNDLIERTISELDPDKAIEMANEADRMIFELGFSLPLYQSAGIVAQREDLANWGAFGLQSADYTKVGFLK GT:EXON 1|1-554:0| BL:SWS:NREP 1 BL:SWS:REP 14->554|Y1311_MYCBO|e-156|52.0|538/591| SEG 409->416|qiaqiaqq| BL:PDB:NREP 1 BL:PDB:REP 58->333|2grvC|5e-21|30.5|269/511| RP:PDB:NREP 1 RP:PDB:REP 56->550|1dppA|7e-58|19.0|479/507| RP:PFM:NREP 1 RP:PFM:REP 119->448|PF00496|7e-26|36.0|297/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 113->466|PF00496|4.5e-61|26.1|345/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 49->537|1xocA1|8e-59|18.6|474/504|c.94.1.1| HM:SCP:REP 49->552|1vr5A1|2.1e-82|30.2|487/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 678 OP:NHOMOORG 368 OP:PATTERN ------------------------1111--1--------------1-23-A63-111-1--------- 11--431222211222222-2322252222223333323611-23311-21-133112--42116453332----2--21--1------------------------------------------222-111-21121144---41-----------------1-------------------221-121--1------121421111184331-3211-145-1111111A2-111-11--1111111----1----------11----1-----112111-111---------------------------1----------51-1---------1-1---111---2-6--111261---11--11--11--------------235---1--1-11111111113---3--1-262--82221122222441----221212----------------1-1-----------------------------------1---1-----------------------23222--232--1----1--212--111---------------2-----1-121111111111--11----12111--------------------1-----------------------------------------1------2342-323332322223-333332233332323333133312--111-1111111111111322222231-111111111111---------------1---1-------------------------1111-1-1-1--1-1-1----------111-------------1---------------11----------------------------------------------21-11-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 516 STR:RPRED 93.1 SQ:SECSTR ####################################ETTEEcccccccccccTTEEEEEEccccccccGGGcccHHHHHHTHHHHccccEEEcTTccccEEEccEEEEEEcTTTccEEEEEEcccccccccTTccHHHHHHHHHHHHcTTcGGGGGGGcccHHEEEEEEEEETTEEEEEEccccTTHHHHHTcccHHHHHHHHHTTcTHHHHHcccccccEEEEEEETHTTEEEEEEcTTcccccccccEEEEEEccHHHHHHHHHTTcccccccccHHHHHHHHHcccEEEEEEcccEEEEEEEcTTccTTTTcHHHHHHHHHTccHHHHHHHTTTTcEEEEEEcccccccTTcTTccTTcccccccHHHHHHHHHHTTcTTcEEccEcEEEEEEccccccTcTTHHHHHHHHHHHHHTTTEEEEEEcccHHHHHHHHHHTTcccEEEEEEEccccTHHHHHHHHcHHHHHHcccTTccccHHHHHHHTHHHHcccHHHHHHHHHHHHHHHHHHccEEEEEEEcEEEEEETTEEcccccTTccccccccEE## DISOP:02AL 1-4, 25-40| PSIPRED ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHEEEcccccEEEcHHHHcccEEEccccEEEEEEEccccEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEcccEEEEEEEccccccccccEEEEEEEEccHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEEEEEcccEEEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEcccccEEEcccccccHHHcEEEc //