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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55008.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  276/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:556 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   80->505 2grvB PDBj 4e-20 29.4 %
:RPS:PDB   56->549 1dppA PDBj 2e-53 17.8 %
:RPS:SCOP  49->539 1xocA1  c.94.1.1 * 2e-57 16.4 %
:HMM:SCOP  49->558 1jetA_ c.94.1.1 * 3e-78 26.3 %
:RPS:PFM   120->450 PF00496 * SBP_bac_5 4e-19 29.1 %
:HMM:PFM   112->462 PF00496 * SBP_bac_5 4.3e-61 28.3 343/372  
:BLT:SWISS 25->556 Y1311_MYCBO e-159 53.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55008.1 GT:GENE BAD55008.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(155588..157258) GB:FROM 155588 GB:TO 157258 GB:DIRECTION - GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD55008.1 LENGTH 556 SQ:AASEQ MRIRSATARLVIGLLVCGLVGCSAADRSADGLSDALGTSSDINPVPREQVREGGNLRLSVSAFPANWNTLSIDGNEGDIADIERPMMPRAFRIDAAGKLTVDTDFFTDVALTNTNPQQVTYTINPKAVWSDGTPVTWADIAAQAAALSGRDTRYQIAMTNGFDRVARVDRGVDDRQAVLTFERPYAEWRGQFAGNAALFPKSVTGDPDSFNSALVDAMGPTAGPFRVQSTDRAQGRIVLERNPLWWGTPPKLDTITFSVLDSAARVAALQNDELDVTPLTSIDEVLTVRESAGLEVRRAAGSRFRHLTFNGAPGSILADAGVRVAISKAIDRQAIASALQNGLVEDPKPLNNHIFLQGQEGYRDNSLPFDPAAAERELDALGWRREGDVRVKDGRRLVIRDVMYDDRTWVQIAQIIQRNLADIGVGMQIDTRPGAGFFTDVIQPGDFDAAQFIFQGDAFPLSSIPQVYGYYPDDLQGNFGRIGSPELNELIERTLSELDPQRAIELANQVDRAVFEEGHSLPLFQWDGSYGVRADLANFGSPGLASYDYTAIGFVQ GT:EXON 1|1-556:0| BL:SWS:NREP 1 BL:SWS:REP 25->556|Y1311_MYCBO|e-159|53.4|524/591| SEG 10->22|lvigllvcglvgc| SEG 163->178|drvarvdrgvddrqav| BL:PDB:NREP 1 BL:PDB:REP 80->505|2grvB|4e-20|29.4|391/509| RP:PDB:NREP 1 RP:PDB:REP 56->549|1dppA|2e-53|17.8|478/507| RP:PFM:NREP 1 RP:PFM:REP 120->450|PF00496|4e-19|29.1|316/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 112->462|PF00496|4.3e-61|28.3|343/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 49->539|1xocA1|2e-57|16.4|475/504|c.94.1.1| HM:SCP:REP 49->558|1jetA_|3e-78|26.3|487/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 479 OP:NHOMOORG 283 OP:PATTERN ------------------------------1----------------21-55--1-----1------- 11--32-2222-1112222-2222242222223333512212-23-1111-1233112--22112443342----2--11--2------------------------------------------1-------1--12233---21-1---------------11--1---------------22----1-11---------1------7422----11-144--------62-------------------------------------------111---------------------------------------------3--1-----------1----------16---1123-1--1-------3-1-------------447--11------1---11112---2----143--A3321213224531---1-----1----------------1-1---------------------------------------2-------------1---------33222---12--1------2-12--111---------------11----1---11121---11-11-----1111--1------------------1--1-----------------------------------1--1------1363-111111111111-111111111111111111122211---11-11111111111113--111111-111111111111---------------11------1-------------------2------1-1----1-211----------1---11111---11------------------11----------------------------------------------1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 520 STR:RPRED 93.5 SQ:SECSTR ##################################ccETTEEcccccccccccTTEEEEEEccccccccGGGcccHcHHHHHTHHHHccccEEEcTTccccEEEccEEEEEEcTTTccEEEEEEcccccccccTTccHHHHHHHHHHHHcTTcGGGGGGGcccHHHHHTTHHHHEEEEEEEEccccTTHHHHHTcGGGccHHHHHHHHHTTcTHHHHHcccccccEEEEEEETTTEEEEEEEcTTcccccccccEEEEEEccHHHHHHHHHTTcccccccccHHHHHHHHHcccEEEEEEcccEEEEEEEcTTccTTTTcHHHHHHHHHTccHHHHHHHTTTTcEEEcccEccccccTTcTTccTTcccccHHHHHHHHHHTTcTTTccccEcEEEEEEcccccTTcTTHHHHHHHHHHHHHTTTEEEEEEcccHHHHHHHHHHTTcccEEEEEEEccccTHHHHHHHHcHHHHHHcccTTccccHHHHHHHTHHHHcccHHHHHHHHHHHHHHHHHHccEEEEEEEcEEEEEETTEEcccccTTcccccGGcEE## DISOP:02AL 1-4, 23-41| PSIPRED ccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHEEEccccEEEEccHHHccccEEcccccEEEEEEccccEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHEEEcccEEEEEEEccccHHHHHHHHHHccccHHHHHccccccccccccccccccccEEEEEEEccccEEEEEEccccccccccEEEEEEEEccHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEEEEEcccEEEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEEcEEEEEEcccccEEcccccccccccccccc //