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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55009.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:621 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   26->264 2oukB PDBj 2e-24 33.9 %
:BLT:PDB   366->613 3dhwC PDBj 3e-39 34.6 %
:RPS:PDB   7->616 3cmvG PDBj 3e-74 8.3 %
:RPS:SCOP  11->266 1b0uA  c.37.1.12 * 4e-43 23.8 %
:RPS:SCOP  361->615 1b0uA  c.37.1.12 * 9e-55 31.0 %
:HMM:SCOP  9->261 1g2912 c.37.1.12 * 1.5e-63 43.8 %
:HMM:SCOP  360->611 1g2912 c.37.1.12 * 2.1e-67 46.0 %
:RPS:PFM   92->189 PF00005 * ABC_tran 2e-09 34.7 %
:RPS:PFM   240->303 PF08352 * oligo_HPY 1e-07 42.9 %
:RPS:PFM   412->539 PF00005 * ABC_tran 2e-15 42.9 %
:RPS:PFM   590->615 PF08352 * oligo_HPY 2e-05 69.2 %
:HMM:PFM   71->189 PF00005 * ABC_tran 2.5e-19 33.3 105/118  
:HMM:PFM   412->538 PF00005 * ABC_tran 8.8e-21 36.8 117/118  
:HMM:PFM   240->305 PF08352 * oligo_HPY 1.4e-19 46.9 64/64  
:HMM:PFM   590->616 PF08352 * oligo_HPY 2e-09 55.6 27/64  
:HMM:PFM   26->68 PF01078 * Mg_chelatase 0.00051 39.5 43/207  
:HMM:PFM   387->419 PF03193 * DUF258 0.00055 31.2 32/161  
:BLT:SWISS 10->621 Y1312_MYCBO 0.0 58.3 %
:PROS 161->175|PS00211|ABC_TRANSPORTER_1
:PROS 511->525|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|12->265|361->615
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55009.1 GT:GENE BAD55009.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(157269..159134) GB:FROM 157269 GB:TO 159134 GB:DIRECTION - GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD55009.1 LENGTH 621 SQ:AASEQ MTDGRTTGEPLLEVAGLTVTFPSEEGRIEAVRGVDYTVAEGEVLAIVGESGSGKSVSALAVMGLLPEQARISGSIRLRGRELLGLGDRQLSKLRGRSISMVFQDPLSALTPVYRVGDQVAEALLAHGRMGRKEAAARAVELLELVGIPDAAVRAKAFPHEFSGGMRQRVVIAMAIANDPALIICDEPTTALDVTVQKQILDLLRQARDITGAGVVMITHDMGIAATLADRVAVMYAGRVVETATAAELFAEPRMPYTVGLLGSIPRLDGPARAPLIPIAGAPPAMHALPPGCSFAPRCPVAVDACRAAEPPLAPTGPARAAACIRTEELGSADLFAAYRREVESAAAPAGPASAAEPPVVLRVTDLVKTFPITSGVILRRRTGEVRAVDGIGFEVRAGRTLALVGESGSGKSTTLTQILDLVPPQGGRIEVLGHDVATLTRAQARQLRRKMQIVFQDPTAALDPRLPISDVLAQPLRIDGRPRAEIARRVPELLELVGLRPEHAERYPADFSGGQKQRISIARALALDPELLVLDEPVSSLDVSIQAGVLNLLRELQDERGLSYLFVSHDLSVVRNLAHDIAVMHRGRIVESGPAEQVLGDPRHPYTRALLDAVPMPALSR GT:EXON 1|1-621:0| BL:SWS:NREP 1 BL:SWS:REP 10->621|Y1312_MYCBO|0.0|58.3|607/612| PROS 161->175|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 511->525|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|12->265|361->615| SEG 73->88|gsirlrgrellglgdr| SEG 133->145|eaaaravellelv| SEG 269->284|gparaplipiagappa| SEG 341->360|evesaaapagpasaaeppvv| BL:PDB:NREP 2 BL:PDB:REP 26->264|2oukB|2e-24|33.9|228/241| BL:PDB:REP 366->613|3dhwC|3e-39|34.6|243/343| RP:PDB:NREP 1 RP:PDB:REP 7->616|3cmvG|3e-74|8.3|541/1167| RP:PFM:NREP 4 RP:PFM:REP 92->189|PF00005|2e-09|34.7|93/123|ABC_tran| RP:PFM:REP 240->303|PF08352|1e-07|42.9|63/64|oligo_HPY| RP:PFM:REP 412->539|PF00005|2e-15|42.9|119/123|ABC_tran| RP:PFM:REP 590->615|PF08352|2e-05|69.2|26/64|oligo_HPY| HM:PFM:NREP 6 HM:PFM:REP 71->189|PF00005|2.5e-19|33.3|105/118|ABC_tran| HM:PFM:REP 412->538|PF00005|8.8e-21|36.8|117/118|ABC_tran| HM:PFM:REP 240->305|PF08352|1.4e-19|46.9|64/64|oligo_HPY| HM:PFM:REP 590->616|PF08352|2e-09|55.6|27/64|oligo_HPY| HM:PFM:REP 26->68|PF01078|0.00051|39.5|43/207|Mg_chelatase| HM:PFM:REP 387->419|PF03193|0.00055|31.2|32/161|DUF258| GO:PFM:NREP 10 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0000166|"GO:nucleotide binding"|PF08352|IPR013563| GO:PFM GO:0005524|"GO:ATP binding"|PF08352|IPR013563| GO:PFM GO:0015833|"GO:peptide transport"|PF08352|IPR013563| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0000166|"GO:nucleotide binding"|PF08352|IPR013563| GO:PFM GO:0005524|"GO:ATP binding"|PF08352|IPR013563| GO:PFM GO:0015833|"GO:peptide transport"|PF08352|IPR013563| RP:SCP:NREP 2 RP:SCP:REP 11->266|1b0uA|4e-43|23.8|249/258|c.37.1.12| RP:SCP:REP 361->615|1b0uA|9e-55|31.0|242/258|c.37.1.12| HM:SCP:REP 9->261|1g2912|1.5e-63|43.8|240/240|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 360->611|1g2912|2.1e-67|46.0|237/240|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 50974 OP:NHOMOORG 1173 OP:PATTERN YYNAUONLVVVUVSZQnLTRPQRWyRUpoZkWJCDDDDHGIECUaTYqNS**lATcSVZNTMLIa19A WcvQ*cijnnpaeVYWXPO-OqAAb*PPPPPP*sut****Z*g****l*tiR***SXkGH***k*u****hfbbb*fdbS*eqBADACPQOK5LEHH--CFPKLLcMWPQ7999999BCCCCCCJUSJTaMMWTWSq****KJK*dzmp*iingnXYPMONQNikao***eIRHLGGIOFLGInYgVUvm9Zfv********************y***iu***mpvvwsst**YhhhgheefghhhfgZcZZX*dcc**aSWVbxwPQ**cVRZmkghkqpswtmvysspvrsoosvnrtdddcaddcgedcc*nnfeeonpng*z*********e*go***RgeZ*khme*cnSO**skZdgnSckcphQccbJgYVVPNOMMPhY***cYv****************-y**sp*v***WC**************JMQ**********TSTTTTTT*bhLRoh*665664446545559A55855755776A5IFFGEG************************p********BO**x*p*ov******fssRYOXqXIJJJJIJUQScwpc**TgY*qVpwdetHecbSWanWececgx*a*KLLOEKKLLLJDBEEDDDEEHUGGHQPnqvP*XcNTNyQYbcXPWfVTTUYVcYWda5-DNYQQ321444****g************-*************z***zx*****llluupstuutvussussr*wqswww*W4************33KICEBCDMOPORK*r*bdcbeYKRURPWQWfLNOONFRIPV*c*************n***EEDCDFEDEMirq*suttu*****WZYQSQQQSRGFEF55PVTTJKOOA9798999*CXCBDCD-DDFCIICGGFADLBFGAAAXguWUr*ruqEjM 1123UVH-gL8DSaQEEK9HPQLTLVOFFBB9BMHHBKGHHGFBDCFDFNKJWQGJIBB9B986866625548695815884455745-GJ8EFDAD9C9A5GJIG2MuavTYPfXfIEDAISHfk9k9**e2cMiHIE5YDGWPBHEB9WBB*BXOOrHe*DoQV9uVc*SgaHJJKI*EGDJJpel*CfoFL*hqnR ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-10, 268-279, 344-359, 617-621| PSIPRED ccccccccccEEEEEccEEEEEccccEEEEEEcccEEEccccEEEEEEEccccHHHHHHHHHHHcccccEEEEEEEEccccHHcccHHHHHHHHHHHccEEEccHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHccEEEEEccHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEEcccEEEccccEEEEEEEccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHccccEEEcccHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHccEEEEEccHHHHHHccccHHHHHHHHHcccccccc //