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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55013.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  53/915 : Eukaryota  45/199 : Viruses  0/175   --->[See Alignment]
d.118.1
:750 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   339->521 1yckA PDBj 6e-16 35.7 %
:RPS:PDB   337->522 2eavA PDBj 4e-27 32.7 %
:RPS:SCOP  337->526 1ohtA  d.118.1.1 * 5e-31 27.3 %
:HMM:SCOP  336->529 2cb3A1 d.118.1.1 * 7.9e-46 39.2 %
:RPS:PFM   365->474 PF01510 * Amidase_2 1e-06 35.8 %
:HMM:PFM   364->515 PF01510 * Amidase_2 9.2e-23 38.6 114/130  
:HMM:PFM   587->631 PF08310 * LGFP 2.8e-07 33.3 45/54  
:HMM:PFM   633->678 PF08310 * LGFP 0.00053 24.4 45/54  
:BLT:SWISS 51->114 PRAX_RAT 7e-04 41.3 %
:BLT:SWISS 336->514 PGSC2_DROME 2e-19 35.3 %
:BLT:SWISS 593->663 CSP1_CORGL 2e-05 38.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55013.1 GT:GENE BAD55013.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(162131..164383) GB:FROM 162131 GB:TO 164383 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55013.1 LENGTH 750 SQ:AASEQ MLVPQRKPKRSFVLPMVTTLAVAAPLAALTMSDSADVRSTNESALAAVPAQLAEVVLTQAPDITLPLRELTGLNLPDLRLSDLRKLPIPPSIHIPEGLPVPPGIQLPTEIPLPRFDSGTPTTTPAPTPGAAPTTTAPAVPAPVPGQPVPAPATASPVPSPASTKFIADPGALPPGTTPDTPALAPGALPQELLDQVGAQVKELSQDTPFSMVALTAADLANTTAMVRARQPDGSWGPWYEAAALDTRRDDRTPAGPTNGTEPIYVGETTAVQILVTRKPAATQPQTSSAAAQSGGIAAIAEDPAHTPDLTAVLIDPGRGPLDGALSDIATALPGGGPNVITRAQWGADESINCQEPTYDDGLGGVTVHHTAGRNDYSKAESAGIVRAIYTYHSQTLGWCDIGYNALVDKYGQIFEGRRGGLDRPVQGAHAGGFNENTSGVALMGNHESEAPTDAAIDAIGRFIGWRTRIAGLDPKGYTTMYSEGTEFTPYAEGEEVRLPIVFAHRDVGNTSCPGDAAYSMMDRIRDIAAGAPGSSGSEAPRRTQSDLAALAELTARLLSMVNDNLIAKHYAATGGPEGPLGAAQSEPLPAAQGQQYAKFVNGYVYTSPQGQAVEVVGAILERFLQLGADAGILGLPLSSPYPVPDGLRSDFQNGSLILNNLTGIVTTVWKTYNDTYQEEMRRNEVAAPGQVPGAPADPQALPPAPGAAGPASPAPNPPADTAAPASPAPAPAPAPAPAPNEPAAPAPVPA GT:EXON 1|1-750:0| BL:SWS:NREP 3 BL:SWS:REP 51->114|PRAX_RAT|7e-04|41.3|63/100| BL:SWS:REP 336->514|PGSC2_DROME|2e-19|35.3|150/184| BL:SWS:REP 593->663|CSP1_CORGL|2e-05|38.0|71/657| SEG 17->30|vttlavaaplaalt| SEG 118->163|gtptttpaptpgaaptttapavpapvpgqpvpapataspvpspast| SEG 213->224|altaadlantta| SEG 279->300|paatqpqtssaaaqsggiaaia| SEG 528->537|aagapgssgs| SEG 547->558|laalaeltarll| SEG 685->749|vaapgqvpgapadpqalppapgaagpaspapnppadtaapaspapapapapapapnepaapapvp| BL:PDB:NREP 1 BL:PDB:REP 339->521|1yckA|6e-16|35.7|154/167| RP:PDB:NREP 1 RP:PDB:REP 337->522|2eavA|4e-27|32.7|156/164| RP:PFM:NREP 1 RP:PFM:REP 365->474|PF01510|1e-06|35.8|95/129|Amidase_2| HM:PFM:NREP 3 HM:PFM:REP 364->515|PF01510|9.2e-23|38.6|114/130|Amidase_2| HM:PFM:REP 587->631|PF08310|2.8e-07|33.3|45/54|LGFP| HM:PFM:REP 633->678|PF08310|0.00053|24.4|45/54|LGFP| GO:PFM:NREP 2 GO:PFM GO:0008745|"GO:N-acetylmuramoyl-L-alanine amidase activity"|PF01510|IPR002502| GO:PFM GO:0009253|"GO:peptidoglycan catabolic process"|PF01510|IPR002502| RP:SCP:NREP 1 RP:SCP:REP 337->526|1ohtA|5e-31|27.3|161/173|d.118.1.1| HM:SCP:REP 336->529|2cb3A1|7.9e-46|39.2|166/0|d.118.1.1|1/1|N-acetylmuramoyl-L-alanine amidase-like| OP:NHOMO 210 OP:NHOMOORG 98 OP:PATTERN -------------------------------------------------------------------- -----1111111--11111-11--1111111111213111111-21--1----1--1-----2-1-1323------------------------------------------------------------------11111---11-------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------752111-2-2--32231636E4-546211222142-123-5112---13----43--9348---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 26.0 SQ:SECSTR ############################################################################################################################################################################################################################################################################################################################################ccccccEEcHHHHTcccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHTcccccccccEEEcTTccEEEcccccccccccccccTTTGGGEEEEEEccccccccccHHHHHHHHHHHHHHHHTTcEEEEEEEEHEHHHHHHHHHHTTcEEEEEEEEEHHHHccccTTcHHHHHHHTHHTTc############################################################################################################################################################################################################################### DISOP:02AL 1-7, 31-322, 527-546, 588-592, 674-695, 719-750| PSIPRED ccccccccccEEEcccccHHHHHcccHHccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEccccEEEEcccccccccEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccEEEEcccEEEEccccccEEccHHHHHHHHHHccccccccccccccEEccccEEEEEccccEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //