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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55031.1
DDBJ      :             putative polyketide synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  860/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
a.28.1a.6.1c.1.19c.19.1c.69.1c.95.1d.358.1
:1737 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   140->575,696->1079 2qo3B PDBj 1e-87 40.5 %
:BLT:PDB   1415->1732 2roqA PDBj 3e-12 26.2 %
:RPS:PDB   46->115 2afdA PDBj 2e-09 27.1 %
:RPS:PDB   144->576 1e5mA PDBj 9e-78 24.6 %
:RPS:PDB   544->721 3c5oA PDBj 3e-14 7.9 %
:RPS:PDB   729->1030 2c2nA PDBj 2e-49 19.9 %
:RPS:PDB   1022->1079 1cjaA PDBj 2e-05 8.9 %
:RPS:PDB   1222->1298 3ejbA PDBj 4e-07 32.4 %
:RPS:PDB   1377->1457 3ce7A PDBj 9e-05 10.5 %
:RPS:PDB   1474->1715 1bn6A PDBj 3e-08 11.3 %
:RPS:SCOP  64->709 1e1cA1  c.1.19.1 * 5e-75 10.9 %
:RPS:SCOP  728->991 1nm2A1  c.19.1.1 * 9e-42 16.9 %
:RPS:SCOP  972->1083 2hh8A1  d.358.1.1 * 1e-10 6.1 %
:RPS:SCOP  1224->1291 1vkuA  a.28.1.1 * 8e-09 25.8 %
:RPS:SCOP  1409->1447 1nd9A  a.6.1.6 * 1e-06 12.8 %
:RPS:SCOP  1460->1728 1jmkC  c.69.1.22 * 1e-22 21.0 %
:HMM:SCOP  40->158 1klpA_ a.28.1.1 * 6.3e-17 30.7 %
:HMM:SCOP  134->575 1tedA_ c.95.1.2 * 2.3e-88 41.7 %
:HMM:SCOP  726->1034 1mlaA1 c.19.1.1 * 1.1e-44 32.6 %
:HMM:SCOP  1217->1393 1klpA_ a.28.1.1 * 3.4e-11 28.9 %
:HMM:SCOP  1451->1728 1xktA_ c.69.1.22 * 4.3e-47 28.7 %
:RPS:PFM   51->115 PF00550 * PP-binding 2e-04 36.9 %
:RPS:PFM   144->400 PF00109 * ketoacyl-synt 7e-59 52.7 %
:RPS:PFM   409->525 PF02801 * Ketoacyl-synt_C 1e-31 58.6 %
:RPS:PFM   729->1007 PF00698 * Acyl_transf_1 7e-30 34.1 %
:RPS:PFM   1477->1571 PF00975 * Thioesterase 2e-14 43.2 %
:HMM:PFM   142->400 PF00109 * ketoacyl-synt 1.6e-78 48.6 249/253  
:HMM:PFM   728->1053 PF00698 * Acyl_transf_1 1e-71 35.4 314/318  
:HMM:PFM   408->525 PF02801 * Ketoacyl-synt_C 6.9e-46 56.4 117/119  
:HMM:PFM   1477->1714 PF00975 * Thioesterase 6.6e-27 28.1 196/229  
:HMM:PFM   49->114 PF00550 * PP-binding 2.5e-11 33.3 66/67  
:HMM:PFM   1227->1273 PF00550 * PP-binding 6.8e-08 44.7 47/67  
:HMM:PFM   1419->1447 PF00550 * PP-binding 0.00087 37.9 29/67  
:BLT:SWISS 45->575,637->1036 PPSA_MYCTU e-134 47.4 %
:BLT:SWISS 1212->1282 RECF_RICBR 1e-04 36.6 %
:BLT:SWISS 1415->1567 DHBF_BACSU 5e-14 29.7 %
:PROS 313->329|PS00606|B_KETOACYL_SYNTHASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55031.1 GT:GENE BAD55031.1 GT:PRODUCT putative polyketide synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 186481..191694 GB:FROM 186481 GB:TO 191694 GB:DIRECTION + GB:PRODUCT putative polyketide synthase GB:PROTEIN_ID BAD55031.1 LENGTH 1737 SQ:AASEQ MADNEGTPDQTTEDATTDAAATPAAEGAVGEAAVGDGPRTDMSVAEVREWLRRWVADATGQPLENITVDRPMEEFGLASRDALALGGDIEELTGVVLTATVVYQHPTIASLAEVIVHGEPEVPETADDEAFYTAGYTPGEAHDIAIVGLSTRLPGAGDTPESTWEFLINGGDAIRELPEGRWAEFMSDPNVAKMIEESNTLGGYLDQEVVKGFDAEFFAMSPIEVERVDPQQRLMMELTWEALEHARIPASELRGESVGMFVGSSTQDFQLIAALGLGDRDPNLPISAEAYALLGASTGIIANRVSYFFDFRGPSVTVDTACSSTLVAVHQAVRALRDGEADLALAGGVNMILAPVATLGFEKNGAVAKNGRIKAFSSDADGMVRSEGAGLVVLKRLADAERDGDRILAVIKGTAVNNDGRSNGLFAPNPDAQADVLRRAYRDAGINPATVDYIEAHGTGTLIGDPIEADALGRVVGRGRDADKPALLGSAKTNFGHLESGAGVPSLAKVVMAFQHNVIPPNINFAGPNPYIPFEQARLKVVDEPTQFPRYSGVATVGISGFGFGGANAHVVLQEYTPPTKAAVAAPDTDTETETTDVIAAATAITAEAGDVVAEATEITAEAAADAAEWSAERTEPLPVILCVSGYLPSRRRRAATELADWLESEAGRDVPLADVARSLAKRSHWRSRGVVLAKTHEEAVAGLRAIAAGKPGTGVFTADAPAAQGPIWVLSGFGAQHRKMGKQLYLENAIFRRTVDEVDELVQDEAGYSVREMILDDAQDYNVGTSQVGIFTIQIGLAALLRAHGAEPEAVVGHSMGEVAGAYIAGGLTLEDAVRVICARSRLMGEGEQMISDDDVRNMALVELSAAEVEAMLTDYPDVEVAVYAAPTNTVIGGPYEQVQAIVAKVEEAGKFARVLQTRGAGHTSQMDPLLGELAAELAGIEPTRLRAGLYSTVHKEKYYRPGHDPVHDEDYWVTNMRHSVYFTNAVKLAVDSGHTTFLELAPNSVALMQVLGTTFAAGLHDAQLIPTLKRKEDESAGVISALAQLYVHGHAVDLSSLLPAGDYADIPRTTFVRKEFWPAARMATGSGTGRVPGAHVALPDGRHVWEVQASAVTDPAELVRAAAAQVLADVTVGASLAHGAVPAAGTLTTTLTPHPGGASVQVHAKEDAQFRLIFDAVVTSGAPLPTPAVAAPSTATAAAPAAEPEVLEQAGDRWDPNGSQTIEERLALIVAESMGYAVEDLPMEIPLMELGLDSLMAMRIKNRVEYEFDIPQLQIQAVRDANLTEVGKVLRYAIEHRDQVAAIAEKQAAGEEITVDADFVTAARAAMEAGEDPVAALETAVGSQDSGTADAPAEPAPVDQEAAAFGEALAAVDEDDVPPRDAAERLTYATWAIVTGKSAGGIFNTLPILEEEVAEKLAARLSERIKAEVTVDDVLDCETIEQLADIVRERQDSGAEIDGFVRPLRPRPEGSDAVPVFVFHPSGGNTLVYEPLLKRLPAHTPMYGFERVDGDIEQRAKQYIPELRRIQGDGPFVLYGWSLGAVFALQVAQLLRAEGADVRVVGLIDLAIPTRDEDNSPEERVRRIERYQAFARKTYGIDAELDRAQLEELAAASDEEQFKMISDLIKISGAKIPGGVLEHQRTSWIESRHLARTTPSRYDGDVVLYLADRYHDGMIELEPRFAERKPNGGWDEYLPHLQVVHIPGDHLQIVDEPRIAKIGADLTAKLVAMEAKGDK GT:EXON 1|1-1737:0| BL:SWS:NREP 3 BL:SWS:REP 45->575,637->1036|PPSA_MYCTU|e-134|47.4|894/1876| BL:SWS:REP 1212->1282|RECF_RICBR|1e-04|36.6|71/360| BL:SWS:REP 1415->1567|DHBF_BACSU|5e-14|29.7|148/2378| PROS 313->329|PS00606|B_KETOACYL_SYNTHASE|PDOC00529| SEG 6->38|gtpdqttedattdaaatpaaegavgeaavgdgp| SEG 582->609|aavaapdtdtetettdviaaataitaea| SEG 614->633|aeateitaeaaadaaewsae| SEG 860->874|malvelsaaeveaml| SEG 931->941|llgelaaelag| SEG 1144->1160|paagtltttltphpgga| SEG 1184->1210|aplptpavaapstataaapaaepevle| SEG 1364->1373|aaafgealaa| BL:PDB:NREP 2 BL:PDB:REP 140->575,696->1079|2qo3B|1e-87|40.5|785/873| BL:PDB:REP 1415->1732|2roqA|3e-12|26.2|279/343| RP:PDB:NREP 8 RP:PDB:REP 46->115|2afdA|2e-09|27.1|70/88| RP:PDB:REP 144->576|1e5mA|9e-78|24.6|402/411| RP:PDB:REP 544->721|3c5oA|3e-14|7.9|140/148| RP:PDB:REP 729->1030|2c2nA|2e-49|19.9|292/317| RP:PDB:REP 1022->1079|1cjaA|2e-05|8.9|56/327| RP:PDB:REP 1222->1298|3ejbA|4e-07|32.4|74/78| RP:PDB:REP 1377->1457|3ce7A|9e-05|10.5|81/90| RP:PDB:REP 1474->1715|1bn6A|3e-08|11.3|239/291| RP:PFM:NREP 5 RP:PFM:REP 51->115|PF00550|2e-04|36.9|65/67|PP-binding| RP:PFM:REP 144->400|PF00109|7e-59|52.7|243/245|ketoacyl-synt| RP:PFM:REP 409->525|PF02801|1e-31|58.6|116/118|Ketoacyl-synt_C| RP:PFM:REP 729->1007|PF00698|7e-30|34.1|267/297|Acyl_transf_1| RP:PFM:REP 1477->1571|PF00975|2e-14|43.2|95/219|Thioesterase| HM:PFM:NREP 7 HM:PFM:REP 142->400|PF00109|1.6e-78|48.6|249/253|ketoacyl-synt| HM:PFM:REP 728->1053|PF00698|1e-71|35.4|314/318|Acyl_transf_1| HM:PFM:REP 408->525|PF02801|6.9e-46|56.4|117/119|Ketoacyl-synt_C| HM:PFM:REP 1477->1714|PF00975|6.6e-27|28.1|196/229|Thioesterase| HM:PFM:REP 49->114|PF00550|2.5e-11|33.3|66/67|PP-binding| HM:PFM:REP 1227->1273|PF00550|6.8e-08|44.7|47/67|PP-binding| HM:PFM:REP 1419->1447|PF00550|0.00087|37.9|29/67|PP-binding| GO:PFM:NREP 3 GO:PFM GO:0048037|"GO:cofactor binding"|PF00550|IPR006163| GO:PFM GO:0009058|"GO:biosynthetic process"|PF00975|IPR001031| GO:PFM GO:0016788|"GO:hydrolase activity, acting on ester bonds"|PF00975|IPR001031| RP:SCP:NREP 6 RP:SCP:REP 64->709|1e1cA1|5e-75|10.9|549/559|c.1.19.1| RP:SCP:REP 728->991|1nm2A1|9e-42|16.9|236/243|c.19.1.1| RP:SCP:REP 972->1083|2hh8A1|1e-10|6.1|99/127|d.358.1.1| RP:SCP:REP 1224->1291|1vkuA|8e-09|25.8|62/85|a.28.1.1| RP:SCP:REP 1409->1447|1nd9A|1e-06|12.8|39/49|a.6.1.6| RP:SCP:REP 1460->1728|1jmkC|1e-22|21.0|214/222|c.69.1.22| HM:SCP:REP 40->158|1klpA_|6.3e-17|30.7|114/115|a.28.1.1|1/3|ACP-like| HM:SCP:REP 134->575|1tedA_|2.3e-88|41.7|362/0|c.95.1.2|1/1|Thiolase-like| HM:SCP:REP 726->1034|1mlaA1|1.1e-44|32.6|233/0|c.19.1.1|1/1|FabD/lysophospholipase-like| HM:SCP:REP 1217->1393|1klpA_|3.4e-11|28.9|114/115|a.28.1.1|2/3|ACP-like| HM:SCP:REP 1451->1728|1xktA_|4.3e-47|28.7|265/0|c.69.1.22|1/1|alpha/beta-Hydrolases| OP:NHOMO 4709 OP:NHOMOORG 1044 OP:PATTERN -------------------------------------------------------------------- 4471J2233331-1EDDLL-LDCCUBMKLLLFFDCDC8FF2OEL1111121114311411OG21Y4QaGV2--------1122111112214112211-145442K76251111111111111112211321111122255111N3465589A2111122211332CJCb61111111111111111111221R3333342333324431233493341114211111111A3111111111111111111113-111111-2-11111112211122233322222352222222222222222222222222222222222111541111111111M1551222113--1211311411111121211121317222233333764363344633333333333333-4464654447427669446555554953253433333441111111114322213112111111111111111111111111111211112221453342GFBBD94456HHII2K5541213124581133243365323212235111222212241141432512431422213435329473313eO231321111111111111111111111333332264224466666566666666666661-22221111111B2C4253344A388323-424322333443533333433494B9422222222222222226333223321746566545565112435333777753D3611113111111122122442122213A55369E78363732A6B311111111234471222234644334343333311112213--1111--------1-1-------------------------1121111111191 1152lz3-311-1128DRBWGIMYkWW223554LNE7BBBA9B444MJGPGHEFBAVRF888111111-111111-11-111111111-1C3D212------4111-1D3R5444312221222412213A2-2231221222411212-31152632322229B1A547A5497244M*73IDL8458M47334122l ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1523 STR:RPRED 87.7 SQ:SECSTR #######################################ccTccTTccccHHHHHHHHcEEcTTcccGGGcccccccTTcTTcTTccccccccccccEEEEEEccccHHHHHHHHHTTTccEEEEEccTTcccTTTHHHHTccEEEEEEEEEcTTccccHHHHHHHHHTTcccEEEccccccTTccccEcEEEccccHHcEEEccccccTTcccGGGTTccHHHHHTccHHHHHHHHHHHHHHHHHTccccTTTGGGEEEEEEcccccHHHHHHHHHHHHHHHcGGGccTTHHHHHcTTHHHHHHHHHHTccccEEccccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEccccHHHHHHHHHTTcccccGTccTTcTTccccccccEEEEEEEEEHHHHHHTTccccEEEEEEEEEEcccccccccTTcHHHHHHHHHHHHHHTccGGGccEEEccccccHHHHHHHHHHHHHHHGGGGGGGGGcEEEcTHHHHcccGGGHHHHHHHHHHHHHHHTEEcccTTcccccTTccccccccccccccEEcccEHHccEEEEEEEETTTEEEEEEEEcccHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHTcccTTcccccTTTTccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccccHHHHHHHHHHTTcccccccHHHHHHHHHHHHTTTTGGGccTTccTHHHHHHHHHHccTTccccHHHHHHHTcTTHHHHHHHHHHHHHHTTccccccccccccHcccGGGccHHHHGGGcccEEGGGTEEccccccEEcHHHHHHHHHHHTTccHHHHHHHHHHHHHTTHHHHHEEccTTccHHHHHHHHHHHHHHTTcccccEEEEEEEETTEEEEEEEHHHHHHHHHTGGGGTcEEEEccccccTTcGGGGGGHHHHHHHHHTccccccccEEEcTTTcGGGccccccGGGHHHHHHHHTTccEEHHHHHHHHTcccccEEEEEccccHHHHHHHHHHcHHHHTTEEEEcccHHHHHHccEEEEEccEEEccccEEETTTTcEEEccccccccEEEETTccEEcccEETTTTEEEEEEEEccGGEEEEETTTccc###########################################################################################################cccHHHHHHHHHHHHccccTTTccTTccTTTTcccTTHHHHHHHHHHHHTTcccccccHHHHHHcccHHHHHHHHHHcHHHccccccccccc###############################################################ccHHHHHHHHHHHHHTTccTTccccTTccGGGcccTTccHHHHHHHHHHHHHTccccHHHHTTcccHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEccTTccGGGGTTTHHHHTTTccEEEEcccccccHHHHHHHHHHHHHHTTcccEEEEEEEHHHHHHHHHHHHcGGGGGGEEEEEEEEEccccccGGGccHHHHHHHHHHTcTTHHHHHHTTccHHHHTHHHHTccccccHHHHHHHHGGGccGGGGHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHcTTEEEEEEEEcccGGGTcHHHHHHHHHHHHHHHHHH##### DISOP:02AL 1-6, 8-44, 585-590, 1335-1371, 1426-1427, 1429-1430, 1446-1465, 1469-1470, 1734-1737| PSIPRED ccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHccccEEccccHHHHHHcccccccccccccccEEccEEcccccccccHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHccccEEEEEEccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccccccccccccccccccEEEcEEEEEEEEcHHHHHHcccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHccEEEccccccccccHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccEEEEEccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHccccccccEEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHcccccEEEEEEEccccEEEEccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccHHHHHHHccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHcccccHHHHHHHccccHHHHHHHHHHHccccHHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHccccccccccccccHHHccccccccEEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccccccccccccHHHHHcccEEEEEcccEEEEcccHHHHHHHHHHHHHHHHHcccccc //