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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55038.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  169/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->194 3ezlA PDBj 6e-13 31.0 %
:RPS:PDB   11->204 3deyX PDBj 4e-18 26.7 %
:RPS:SCOP  11->194 1a27A  c.2.1.2 * 4e-18 26.0 %
:RPS:SCOP  178->230 1a4uA  c.2.1.2 * 4e-04 24.5 %
:HMM:SCOP  7->257 1jtvA_ c.2.1.2 * 9.8e-33 23.1 %
:HMM:PFM   10->172 PF00106 * adh_short 3.5e-20 23.4 158/167  
:BLT:SWISS 1->259 Y3820_MYCBO e-107 76.7 %
:PROS 146->174|PS00061|ADH_SHORT

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55038.1 GT:GENE BAD55038.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(205393..206172) GB:FROM 205393 GB:TO 206172 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55038.1 LENGTH 259 SQ:AASEQ MINAVGNPQAILLLGGTSEIGLAICAEYLKKAPARVILATLPGDPLRADAVAQMEAAGASEVEVIDFDALDTDSHPKVIDAAWARGDVDVAIVAFGLLGEAEELWRNQRKAVQIAEINYTAAVSVGVLVGEKMQAQGYGRIIAMSSAAGERVRRSNFVYGSTKAGLDGFYLGLGEALRPFGPRVLVVRPGQVRTRTTIEHWKATGAKEAPFTVDKEEVAALAVSASDKGKELIWAPGVFRYVMMVLRHIPRPIFRRLPI GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 1->259|Y3820_MYCBO|e-107|76.7|253/254| PROS 146->174|PS00061|ADH_SHORT|PDOC00060| BL:PDB:NREP 1 BL:PDB:REP 15->194|3ezlA|6e-13|31.0|174/243| RP:PDB:NREP 1 RP:PDB:REP 11->204|3deyX|4e-18|26.7|191/277| HM:PFM:NREP 1 HM:PFM:REP 10->172|PF00106|3.5e-20|23.4|158/167|adh_short| RP:SCP:NREP 2 RP:SCP:REP 11->194|1a27A|4e-18|26.0|181/285|c.2.1.2| RP:SCP:REP 178->230|1a4uA|4e-04|24.5|53/254|c.2.1.2| HM:SCP:REP 7->257|1jtvA_|9.8e-33|23.1|247/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 243 OP:NHOMOORG 177 OP:PATTERN -------------------------------------------------------------------- ---1222222221232211-12112222222224442232-11-2----------------1--2221111-------------1--------------21----2-1-1----------------1-------2---------------11--1----------1------1----------1------------------------------------------------1---------------1----1---11-1---1111111----1----------------------------------------------------------------------------------------------------2--------21--1----2-1------------------11113--2---11--2111--1---1--1-----------------1-----------------------------------1-------111211-111111221111114121111-2112--1-------1--1----------------112---------1------------------2--1--------------------1---2------1----------------------------1-2---------------------------------------------------------------------------------------------------11111-------------------111-11---1----1---1------1-11------------------------111---------------221111------------------------------------------1------ --------------------111---1------------------------1-1-----------------------------------------------------1---------------------------------------------------------------------------1--------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 253 STR:RPRED 97.7 SQ:SECSTR ######ccEEEEEcccccHHHHHHHHHHHHHcTTccEEEEEEEccGGGTHHHHHTTccTTcEEEEEccTTcHHHHHHHHTcTTccccEEEEcccccccccGGGccHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEcccccccHHHHHTTcEETTEEGGccHHHHHHTHHHHHTHHHHHHHHHcccccHHHHHccHHHHHHHHHcc DISOP:02AL 1-6| PSIPRED cccccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHccHHHHHHccc //