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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55057.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  404/915 : Eukaryota  141/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:281 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->281 3e03C PDBj 3e-56 53.4 %
:RPS:PDB   7->281 3e03B PDBj 1e-30 43.1 %
:RPS:SCOP  8->257 1a27A  c.2.1.2 * 5e-23 21.0 %
:HMM:SCOP  5->252 1zemA1 c.2.1.2 * 4.2e-44 32.3 %
:RPS:PFM   57->137 PF00106 * adh_short 4e-13 40.7 %
:HMM:PFM   10->140 PF00106 * adh_short 4.6e-21 24.8 125/167  
:BLT:SWISS 7->281 HSDL2_XENTR 9e-64 50.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55057.1 GT:GENE BAD55057.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(226246..227091) GB:FROM 226246 GB:TO 227091 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55057.1 LENGTH 281 SQ:AASEQ MTENKPLAGKTMIMSGGSRGIGLEIAKRAAADGAAITLIAKTDQPHPKLPGTIHTAAAELEAAGGQVLPFVGDIRSDESVQQAVDATVARFGGIDLVVNNASAIDLSPTDALPMKKYDLMQDINCRGSFLLSKLCLPHLRESARAGRNPHILTLSPPLNLDPKWAGASLGYTIAKYGMSLTTLGLAEELKNDGIGVNSLWPRTTIATAAVRNLLGGEEMVSTSRTPDIYADAAYLVLTADAAKTTGNFFIDDEVLAAHGITDLDKYRVVPGDGPLTTDLFL GT:EXON 1|1-281:0| BL:SWS:NREP 1 BL:SWS:REP 7->281|HSDL2_XENTR|9e-64|50.2|267/417| SEG 26->40|akraaadgaaitlia| BL:PDB:NREP 1 BL:PDB:REP 7->281|3e03C|3e-56|53.4|262/266| RP:PDB:NREP 1 RP:PDB:REP 7->281|3e03B|1e-30|43.1|262/265| RP:PFM:NREP 1 RP:PFM:REP 57->137|PF00106|4e-13|40.7|81/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 10->140|PF00106|4.6e-21|24.8|125/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 8->257|1a27A|5e-23|21.0|238/285|c.2.1.2| HM:SCP:REP 5->252|1zemA1|4.2e-44|32.3|235/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1327 OP:NHOMOORG 559 OP:PATTERN -----------------1------4--12211-------------111--111--------------1 336-4--1111---29556-56--4C5455549BFB8A77-6162--1----424-11--212-12134----------1-24----------------1-112261412------------------------21111--222211235112-111-----1---1636-------------522----12222222222332222221-22222222-24241111111-61--------------1111221--11-1-------12--2---1-----------------------11--11111---------------2--1111111111211331---11-----1-11--11--1--111-1-12--6443------121---22211111211-11213-2122251--42-833247688754-21212-311-21-------------11-21------------------------------23711211-37668642222133442222-28484863--33113121523-75-1-11-1-----------22---4-1-------11---2--3-1-1131146---------------------------11---12-111---1212-----------1------1--------1-1-111-------------------1----------22111--111111111111111112------------------------2-----2222--151-----1---------11111--1-13145351333231113223-------------1----------2211111-----------11---------------------------------------------1111112- ----542-----2212112-121414511111111111111111112332122411211111----------------------------6-114-----1-2122-21-L3244142121121441316A2-34411-1411211111-211212124A8727775523852332--2E111---1131-1-1311-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 281 STR:RPRED 100.0 SQ:SECSTR HHHGGccTTcEEEEETTTcHHHHHHHHHHHHTTcEEEEEEccccccTTccccHHHHHHHHHHHTcEEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccccGGGccHHHHHHHHTHHHHHHHHHHHHHHHHTHTTccccEEEEEcccccccHHHHHHcTTcHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEccccccccGGGGcHHHTTccGGGcccTHHHHHHHHHHTcccTTccccEEEHHHHHHHTTccccGGGcccTTcccccccTTc DISOP:02AL 1-4| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccEEEEEcccEEEEEEccccccccccccccccccccc //