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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55058.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  690/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   61->312 2rcnA PDBj 6e-30 36.1 %
:RPS:PDB   175->206 3cmvA PDBj 6e-06 25.0 %
:RPS:PDB   186->267 3a1tA PDBj 6e-09 30.3 %
:RPS:SCOP  158->246 1tpzA  c.37.1.8 * 8e-09 26.5 %
:RPS:SCOP  272->307 1t9hA2  c.37.1.8 * 1e-04 41.7 %
:HMM:SCOP  96->318 1t9hA2 c.37.1.8 * 1.5e-48 39.5 %
:RPS:PFM   160->307 PF03193 * DUF258 8e-36 52.7 %
:HMM:PFM   162->308 PF03193 * DUF258 1e-46 44.2 147/161  
:HMM:PFM   108->184 PF04723 * GRDA 0.00024 34.2 76/150  
:BLT:SWISS 10->330 RSGA_STRAW 3e-93 56.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55058.1 GT:GENE BAD55058.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(227260..228306) GB:FROM 227260 GB:TO 228306 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55058.1 LENGTH 348 SQ:AASEQ MVDHDLLVPYGWTEPVAARYAALIDPDCVPARVVRMDRSECDVVTPTGPARARCPRADSEVSGLCTGDWVSVDARGEVRALLPRHTAIVRSAASGRSEGQVLAANVDTVLICTAADGDVDLGRIERMLALVWESGAQPVVVLTKADAAEHVPLDEVRAIAPGATVLAVSASAEIGLDVLTAVLDGTVALLGPSGAGKSTLANALLGREVFATNEVRAADKKGRHTTVHRELRPLPGGGTLIDTPGLRGVGLWDAAEGIGRTFSDIEELAARCRFSDCAHEAEPGCAVREAIEAGVLTARRLASYRKLAKENAWMAARTDKRLQAERDRAWRGIVKEQRRRYRERDNRR GT:EXON 1|1-348:0| BL:SWS:NREP 1 BL:SWS:REP 10->330|RSGA_STRAW|3e-93|56.7|321/370| SEG 338->347|rrryrerdnr| BL:PDB:NREP 1 BL:PDB:REP 61->312|2rcnA|6e-30|36.1|233/278| RP:PDB:NREP 2 RP:PDB:REP 175->206|3cmvA|6e-06|25.0|32/1190| RP:PDB:REP 186->267|3a1tA|6e-09|30.3|76/254| RP:PFM:NREP 1 RP:PFM:REP 160->307|PF03193|8e-36|52.7|148/160|DUF258| HM:PFM:NREP 2 HM:PFM:REP 162->308|PF03193|1e-46|44.2|147/161|DUF258| HM:PFM:REP 108->184|PF04723|0.00024|34.2|76/150|GRDA| GO:PFM:NREP 2 GO:PFM GO:0003924|"GO:GTPase activity"|PF03193|IPR004881| GO:PFM GO:0005525|"GO:GTP binding"|PF03193|IPR004881| RP:SCP:NREP 2 RP:SCP:REP 158->246|1tpzA|8e-09|26.5|83/395|c.37.1.8| RP:SCP:REP 272->307|1t9hA2|1e-04|41.7|36/212|c.37.1.8| HM:SCP:REP 96->318|1t9hA2|1.5e-48|39.5|220/0|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 821 OP:NHOMOORG 709 OP:PATTERN ----------------------------------------------11--111--------------- --1-1111---11111112-11111111111111112222111122112111232112--23-12122231-------1121-1-1--11211111---11111111211--------------11112211122111111---1121111111111111111111212111111---1111-1-------111222222221222222112211222111222222222222111111111111111111111121111111122111111111-11111111111111111111111111111111111111111111111112111111111111122111113121111111222211211111111111-11--1-----------------1------------11-11----1-----1---11-----1---1--1----1---------------------------------------------------1111111111111111111111111111111111111111111111111111111121111111111111111111-11-12111-2-2211111111111-------------------------1---111111111111111111211111122121--1-1-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11-----11111111311111111111111111111111111111111111111111111111111111222231111122222111111111111111121111222111111112-1111-1-11-11-----1-11111111211111111-11 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-------1--11151-1-11--2-21------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 270 STR:RPRED 77.6 SQ:SECSTR ############################################################ccccccTcEEccccEccEEEEccccEEccccccccccTTcEEEEcccEEHEEcccHTTccHHHHHHHHHHHHHHTcEEEEEEEEEcEETTccEEEEEEEcccccEETEEcTTHHHHHGGEEEEEEEEEEEccTTccHHHHHHHHHTTccEEcccEEEEEcTTcccEEEEEEEEETTEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEccTTccHHHHHHHHHHHTTccHHHTTcccHHHHHHHHHTccHHHHHHHTTTcTTTT################## DISOP:02AL 1-3, 316-348| PSIPRED ccccHHHHHccccHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccEEEEEEEcccccccccEEccEEEEccccEEEEEEccccEEEEccccccHHHHHHEEEccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHEEEcccccccccccccEEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //