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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55066.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  105/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:164 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   36->129 2pfbB PDBj 6e-07 36.0 %
:RPS:PDB   21->159 2a61A PDBj 2e-13 20.0 %
:RPS:SCOP  33->146 2fbiA1  a.4.5.28 * 5e-18 27.0 %
:HMM:SCOP  17->158 1jgsA_ a.4.5.28 * 2.6e-27 30.4 %
:RPS:PFM   53->107 PF01047 * MarR 3e-04 37.7 %
:HMM:PFM   50->109 PF01047 * MarR 1.3e-12 34.5 58/59  
:BLT:SWISS 48->149 YFIV_BACSU 1e-08 32.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55066.1 GT:GENE BAD55066.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 235854..236348 GB:FROM 235854 GB:TO 236348 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55066.1 LENGTH 164 SQ:AASEQ MPIPPSDAAPATEPRWLSPAEQRAWRAYMDGHQRLMATLNRQLLRDSDLSFAEYRILVLLSEAPEHALRMSELADGVLSSRSRLTHQIRRMEAQGLVRRASCPDDGRGVLAELTEAGMRKLESAAPGHVEAVRRDFIDLLTPEELAAVHRVFARVDDTIGAREE GT:EXON 1|1-164:0| BL:SWS:NREP 1 BL:SWS:REP 48->149|YFIV_BACSU|1e-08|32.7|98/160| BL:PDB:NREP 1 BL:PDB:REP 36->129|2pfbB|6e-07|36.0|86/123| RP:PDB:NREP 1 RP:PDB:REP 21->159|2a61A|2e-13|20.0|135/142| RP:PFM:NREP 1 RP:PFM:REP 53->107|PF01047|3e-04|37.7|53/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 50->109|PF01047|1.3e-12|34.5|58/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 33->146|2fbiA1|5e-18|27.0|111/136|a.4.5.28| HM:SCP:REP 17->158|1jgsA_|2.6e-27|30.4|138/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 224 OP:NHOMOORG 105 OP:PATTERN -------------------------------------------------------------------- ---19112222111211----3--15-----135557545141753113222523411--1252A246693-----------------------------------------------------------------111--------------------------------------------1----------11111111-111111------111--------------------------------------------------------------------------------------------------------1--------------------11-----------------------------------------------------------------------------1-----------------11-----------------------------------------------------------1111-1111----------------1--------1-----------------------------------------------------------11-1--------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------1-1------111--------------------------------------------1111------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 95.1 SQ:SECSTR ########ccccccccHHHHcHHHHHHHHHHHHHHHHHHHTTHHHHHTccHHHHHHHHHHHHHccEEccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHc DISOP:02AL 1-4, 6-11, 14-15, 160-164| PSIPRED ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccc //