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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55067.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  147/915 : Eukaryota  59/199 : Viruses  0/175   --->[See Alignment]
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   88->205 3e4zA PDBj 2e-04 19.6 %
:RPS:PFM   46->216 PF03824 * NicO 1e-12 42.2 %
:HMM:PFM   47->337 PF03824 * NicO 5.5e-78 38.4 279/282  
:BLT:SWISS 83->341 HUPN_BRAJA 2e-53 43.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55067.1 GT:GENE BAD55067.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 236523..237590 GB:FROM 236523 GB:TO 237590 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD55067.1 LENGTH 355 SQ:AASEQ MTSRGCDMRSVLGMVAAVVALHVIGWGTLLLFVVPGHHVVQGAVFGVGLGVTAYTLGMRHAFDADHIAAIDNITRKLTAEHPGRTVHSVGFWFALGHSSVVFALVALLAFGVRALARNLEDDGSALQQWTGLWGTSVSGLFLIAIGLLNLVSLLAIWRVFRRMRRGEYDEARLERALDDRGLLNRILAPVVRLVRAPWHMYPVGLLFGLGFDTVTEVGLLVIAGGAAATDLPWYSILVLPVLFSAGMTLFDSLDGSFMTHAYDWAFAQPVRKIYYNLVVTGLSVAVALLIGGQEIISIFVERLDIESGLIAWIGHLDIGELGYIVVGLFVATWAVAYAVWRLGRLDQRWSDRLVR GT:EXON 1|1-355:0| BL:SWS:NREP 1 BL:SWS:REP 83->341|HUPN_BRAJA|2e-53|43.7|254/381| TM:NTM 9 TM:REGION 9->31| TM:REGION 38->60| TM:REGION 90->112| TM:REGION 135->157| TM:REGION 203->225| TM:REGION 231->253| TM:REGION 273->295| TM:REGION 297->319| TM:REGION 321->343| SEG 63->73|dadhiaaidni| SEG 223->228|aggaaa| RP:PDB:NREP 1 RP:PDB:REP 88->205|3e4zA|2e-04|19.6|112/953| RP:PFM:NREP 1 RP:PFM:REP 46->216|PF03824|1e-12|42.2|154/278|NicO| HM:PFM:NREP 1 HM:PFM:REP 47->337|PF03824|5.5e-78|38.4|279/282|NicO| GO:PFM:NREP 4 GO:PFM GO:0016021|"GO:integral to membrane"|PF03824|IPR011541| GO:PFM GO:0030001|"GO:metal ion transport"|PF03824|IPR011541| GO:PFM GO:0046872|"GO:metal ion binding"|PF03824|IPR011541| GO:PFM GO:0055085|"GO:transmembrane transport"|PF03824|IPR011541| OP:NHOMO 242 OP:NHOMOORG 218 OP:PATTERN ------1121112211---------------------------1------------------1----- 1---1---------11111-1---1-11111-----111-111-1-------11111-----1---12-------1--------1---------------------------------------------------------------------------------------------------1---------------1---------------------------------111111111111111--1---1----1-----------111----------------------------------------------------------------------------------------------------------------212---1-11------------------1-1----2--------------------------111111111---1----------------------------------1--------311111111112211111111132--2-----1------------------1---------------------------------------------------------1-1111111---------------------------------------------------11111-------------------------------1111-11-11-11111111-1-111---------111111111111--------------------------------------------------------------1------------------------------------------------------------------------------------------------ --------------1-111-1111111111111111122113311111111-1-112-1111------------------------1--1-11111111----111--2--------------------------------------------------------------------------------1--------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 31.5 SQ:SECSTR #######################################################################################EEEEEEEcGGHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE#cTTHHHHHHHHH#####HHHHTccccHHHHHHHHHHHHHHHGGGcccccHHHHHHHHccccc###################################################################################################################################################### DISOP:02AL 1-7, 166-169| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //