[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55073.1
DDBJ      :             putative endoribonuclease
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  93/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
d.79.1
:130 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->126 2dyyG PDBj 5e-09 29.0 %
:RPS:PDB   4->128 2dyyA PDBj 1e-18 26.0 %
:RPS:SCOP  2->128 1jd1A  d.79.1.1 * 9e-17 24.0 %
:HMM:SCOP  4->129 1qd9A_ d.79.1.1 * 2.1e-34 41.1 %
:RPS:PFM   19->128 PF01042 * Ribonuc_L-PSP 4e-06 38.5 %
:HMM:PFM   14->128 PF01042 * Ribonuc_L-PSP 5.4e-30 39.5 114/121  
:BLT:SWISS 19->126 Y1251_PYRAB 2e-09 29.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55073.1 GT:GENE BAD55073.1 GT:PRODUCT putative endoribonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(242535..242927) GB:FROM 242535 GB:TO 242927 GB:DIRECTION - GB:PRODUCT putative endoribonuclease GB:PROTEIN_ID BAD55073.1 LENGTH 130 SQ:AASEQ MSQRVNISSASEFEDVVGYSRAVRIGDHIAVSGTTAAGPGGTAIGGDDIGAQAREALRRIGIALTEAGASLADVVRTRIFVTDIARWPEVAAAHAEVFGDIRPAASMYEVRALITPALLVEIEADAVVTG GT:EXON 1|1-130:0| BL:SWS:NREP 1 BL:SWS:REP 19->126|Y1251_PYRAB|2e-09|29.9|107/127| SEG 33->51|gttaagpggtaiggddiga| BL:PDB:NREP 1 BL:PDB:REP 19->126|2dyyG|5e-09|29.0|107/125| RP:PDB:NREP 1 RP:PDB:REP 4->128|2dyyA|1e-18|26.0|123/125| RP:PFM:NREP 1 RP:PFM:REP 19->128|PF01042|4e-06|38.5|109/119|Ribonuc_L-PSP| HM:PFM:NREP 1 HM:PFM:REP 14->128|PF01042|5.4e-30|39.5|114/121|Ribonuc_L-PSP| RP:SCP:NREP 1 RP:SCP:REP 2->128|1jd1A|9e-17|24.0|125/126|d.79.1.1| HM:SCP:REP 4->129|1qd9A_|2.1e-34|41.1|124/0|d.79.1.1|1/1|YjgF-like| OP:NHOMO 109 OP:NHOMOORG 108 OP:PATTERN ------------------------1--11--------------------------------------- ----1---------11111-11--1-11111111111111-11-1-------111-------1-1---11------------1------------------1-----1--------------------------1-----------1--------11----------------------------1---------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------1--------------111---11111--------------1---11-1--------1---12----11111111----------------1--------------------------------1-1---11---11----1111----11111-11--1--------------1--1------------------1------------1------------------1--------------------------------------------------------1-1----------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------- --------------1----------------------------------111111-11------1----------------------------1-----------------------------------------------------------------------------------------1--------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 128 STR:RPRED 98.5 SQ:SECSTR HHHEEEEccTTccccccccccEEEETTEEEEEEEccccTTTcccccccHHHHHHHHHHHHHHHHHHTTccGGGEEEEEEEEcccccTTHHHHHHHHHHTTTccEEEEEEcccccGGGccEEEEEEEEc## DISOP:02AL 1-2| PSIPRED ccccEEcccccccHHHcccccEEEEccEEEEEEEEcccccccEEccccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEEEEEEEEcc //