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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55078.1
DDBJ      :             putative prephenate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  374/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.100.1c.2.1
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->193 3dzbB PDBj 2e-12 33.3 %
:RPS:PDB   8->142 2d5cA PDBj 6e-04 16.4 %
:RPS:SCOP  33->172 2g5cA2  c.2.1.6 * 5e-23 22.8 %
:RPS:SCOP  176->275 2f1kA1  a.100.1.12 * 7e-07 23.0 %
:HMM:SCOP  7->175 2f1kA2 c.2.1.6 * 4.5e-28 36.0 %
:HMM:SCOP  176->285 2f1kA1 a.100.1.12 * 3.5e-21 39.4 %
:RPS:PFM   34->234 PF02153 * PDH 2e-19 40.4 %
:HMM:PFM   61->261 PF02153 * PDH 2.1e-47 37.3 201/258  
:HMM:PFM   9->98 PF03446 * NAD_binding_2 6.7e-07 22.1 86/163  
:BLT:SWISS 55->193 TYRA_LACLM 2e-14 33.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55078.1 GT:GENE BAD55078.1 GT:PRODUCT putative prephenate dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(246165..247115) GB:FROM 246165 GB:TO 247115 GB:DIRECTION - GB:PRODUCT putative prephenate dehydrogenase GB:PROTEIN_ID BAD55078.1 LENGTH 316 SQ:AASEQ MTGDANAPVCVLGTGLIGGSLLRAARAAGYPAFGYNRSSAGVLAARGDGFDVADDLPAVLRRAAREDALIVVAVPMPAVDHLLADIATFAPECVLTDVVSVKGPVAEAVARHGLSARYVGGHPMAGTAESGWAATDPELFRGAVWAVGVDEGTRAEPWRRVVRLALACGSTVVPVTAAEHDRAVARISHLPHVLAEALAVAGAAGGPLALGLAAGSFRDGTRVAGTAPDLVRAICEPNAAALLDVLEETLTVLGAARDSLRADGTLGELVDAGHDGHTDYRTVRRWEITDVRPGEHDWLARLREAGLRGGVLTALD GT:EXON 1|1-316:0| BL:SWS:NREP 1 BL:SWS:REP 55->193|TYRA_LACLM|2e-14|33.3|132/354| SEG 15->29|gliggsllraaraag| SEG 194->215|laealavagaaggplalglaag| SEG 240->253|aalldvleetltvl| BL:PDB:NREP 1 BL:PDB:REP 30->193|3dzbB|2e-12|33.3|153/270| RP:PDB:NREP 1 RP:PDB:REP 8->142|2d5cA|6e-04|16.4|128/261| RP:PFM:NREP 1 RP:PFM:REP 34->234|PF02153|2e-19|40.4|198/255|PDH| HM:PFM:NREP 2 HM:PFM:REP 61->261|PF02153|2.1e-47|37.3|201/258|PDH| HM:PFM:REP 9->98|PF03446|6.7e-07|22.1|86/163|NAD_binding_2| GO:PFM:NREP 2 GO:PFM GO:0004665|"GO:prephenate dehydrogenase (NADP+) activity"|PF02153|IPR003099| GO:PFM GO:0006571|"GO:tyrosine biosynthetic process"|PF02153|IPR003099| RP:SCP:NREP 2 RP:SCP:REP 33->172|2g5cA2|5e-23|22.8|136/171|c.2.1.6| RP:SCP:REP 176->275|2f1kA1|7e-07|23.0|100/114|a.100.1.12| HM:SCP:REP 7->175|2f1kA2|4.5e-28|36.0|164/0|c.2.1.6|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 176->285|2f1kA1|3.5e-21|39.4|109/0|a.100.1.12|1/1|6-phosphogluconate dehydrogenase C-terminal domain-like| OP:NHOMO 376 OP:NHOMOORG 374 OP:PATTERN -------------------------------------------------------------------- -1--111111111111111-11111111111111111111112111--1111111111--1111111111-1111111-11-1-1---------------11---1--1----------------1-1-11--11111111---11111111111111-111-11111111111111111111111-1----1-11111111-11111111111111111111--------11------------------1-1------1---11-------1---11-------11111111111111-------------111111111-11-1-----------1-------1-1--111111111111-11--11----1-111--------111111111111111111111----------111-111111111111---1-1111111111111111111--11111------------------------------1----111111----1-1---1111----11111111-1-111--1------11-111211--1--1-----1111---------------1111111111--1-----1111----------------1---11----11----------------------------111------------------------------------------------------------------------------------------------------11-1----------------1111111--111----11111-1111--1---------1----------------------------111-----11----------------------------------------------111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 223 STR:RPRED 70.6 SQ:SECSTR #######cEEEEcccHHHHHHHHHHHHTTccEEEEcccHHHHHHHHHHHTcEEccGGGGHHHGGccEEEEcccTTTTcTTcccccGGGcccccEEEEccccccccHHHHHHHHTTcEEEccHHHHHEcHHHHHHHHHHHHHccETcEEEEEEccHHHHHHHHHHHHHHEEEEEEEEcTTHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHccHHHHHHHTGGGccHHH###################################################################################### DISOP:02AL 1-5| PSIPRED ccccccccEEEEEEcHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHccccccccccccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccHHHccc //