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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55080.1
DDBJ      :             putative cytidine/deoxycytidylate deaminase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  805/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
c.97.1
:159 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   58->159 1z3aA PDBj 1e-28 58.4 %
:RPS:PDB   56->159 2b3jA PDBj 5e-28 50.5 %
:RPS:SCOP  57->159 1wwrA1  c.97.1.2 * 5e-29 43.6 %
:HMM:SCOP  7->159 1z3aA1 c.97.1.2 * 2.7e-44 51.0 %
:RPS:PFM   57->111 PF00383 * dCMP_cyt_deam_1 4e-13 62.3 %
:HMM:PFM   13->111 PF00383 * dCMP_cyt_deam_1 1.5e-27 42.3 97/102  
:BLT:SWISS 58->159 TADA_SHIFL 3e-28 58.4 %
:PROS 62->100|PS00903|CYT_DCMP_DEAMINASES
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55080.1 GT:GENE BAD55080.1 GT:PRODUCT putative cytidine/deoxycytidylate deaminase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 247724..248203 GB:FROM 247724 GB:TO 248203 GB:DIRECTION + GB:PRODUCT putative cytidine/deoxycytidylate deaminase GB:PROTEIN_ID BAD55080.1 LENGTH 159 SQ:AASEQ MTAPLGPGPLAADEAMIRVAIEAAAAADPRDVPVGAVVFDAQGRELARAANAREASGDPTAHAEILALRRAAQVHGDGWRLAGATLAVTLEPCTMCAGALVLARVDRLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLETECAALLDTFFRTHR GT:EXON 1|1-159:0| BL:SWS:NREP 1 BL:SWS:REP 58->159|TADA_SHIFL|3e-28|58.4|101/167| PROS 62->100|PS00903|CYT_DCMP_DEAMINASES|PDOC00702| SEG 14->38|eamirvaieaaaaadprdvpvgavv| SEG 44->55|relaraanarea| BL:PDB:NREP 1 BL:PDB:REP 58->159|1z3aA|1e-28|58.4|101/156| RP:PDB:NREP 1 RP:PDB:REP 56->159|2b3jA|5e-28|50.5|103/151| RP:PFM:NREP 1 RP:PFM:REP 57->111|PF00383|4e-13|62.3|53/100|dCMP_cyt_deam_1| HM:PFM:NREP 1 HM:PFM:REP 13->111|PF00383|1.5e-27|42.3|97/102|dCMP_cyt_deam_1| GO:PFM:NREP 2 GO:PFM GO:0008270|"GO:zinc ion binding"|PF00383|IPR002125| GO:PFM GO:0016787|"GO:hydrolase activity"|PF00383|IPR002125| RP:SCP:NREP 1 RP:SCP:REP 57->159|1wwrA1|5e-29|43.6|101/151|c.97.1.2| HM:SCP:REP 7->159|1z3aA1|2.7e-44|51.0|151/0|c.97.1.2|1/1|Cytidine deaminase-like| OP:NHOMO 843 OP:NHOMOORG 827 OP:PATTERN -------------------------------------------------------------------- 11111-1211111111111-1111111111111111111111211111111121211111111121111111111111111111-111111111111--11111111-2111111111111111111111111111----------11111111111111111111111111111111111111111111-111111111111111111111111111111111111111112111111--1111111111111111111111111111111111111111111111111111-111111-1111111111111111111111111111111111111111111111111111111111111111111111--112111-11111121111111111111111111111-11111111111-111111111111111-11111111111111111111111112111111111111111111111111111111-11-111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111211-------------------------111111111111111111111111111111111-1111111-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111------------------1-----------------------------------111 ------------------------------------------------------------------------------------------------------------2-------1-------1--------------------------------------1--------1---1112111111112-1-111---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 104 STR:RPRED 65.4 SQ:SECSTR #######################################################HTcTTccHHHHHHHHHHHHHHTccccTTEEEEEEEcccHHHHHHHHHTTccEEEEEEccTTTcTcTTcccTTccTTcccccEEEccTTHHHHHHHHHHHHHHHH DISOP:02AL 1-7| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHcc //