[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55081.1
DDBJ      :             putative phage integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  60/915 : Eukaryota  0/199 : Viruses  7/175   --->[See Alignment]
c.92.2d.163.1
:394 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   68->365 3crxA PDBj 2e-14 12.7 %
:RPS:SCOP  124->163 2etvA1  c.92.2.4 * 1e-04 30.0 %
:RPS:SCOP  188->365 1aihA  d.163.1.1 * 4e-20 30.8 %
:HMM:SCOP  187->368 1a0pA2 d.163.1.1 * 4e-32 29.9 %
:RPS:PFM   200->362 PF00589 * Phage_integrase 2e-06 34.2 %
:HMM:PFM   188->360 PF00589 * Phage_integrase 1.3e-29 31.1 161/173  
:BLT:SWISS 13->282 VINT_BPML5 2e-11 30.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55081.1 GT:GENE BAD55081.1 GT:PRODUCT putative phage integrase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(248379..249563) GB:FROM 248379 GB:TO 249563 GB:DIRECTION - GB:PRODUCT putative phage integrase GB:PROTEIN_ID BAD55081.1 LENGTH 394 SQ:AASEQ MKVHAMATIEPYETQSGRRYRVRYRKPGGKQTDKRGFRRKIDAERFAATVEVSKMSGEYVAPSLGRITVGELAPKWLERKQVDVAESNYRTLESAWRTHVQPRWGTVAVADVELDAVETWIADLGRTVTDPNEPEKVIRKGSGATTIIRAYGVLAGILDTAVKSKRLRVNPARGVENLPKKVGKRHVYLTADDVQRLAAESGAERRALVLTLAYCGIRWGEAVALRVGDIDFLRRRLTVADNAVQLGVDHAVGHTKSRKVRAVPVPQFVLDELSVQCRGRDRKALVFGDGVNYLPRPKSSGGWFAGAVKRARVQAITPHDLRHTCASLAVSANVNVLALARMLGHADASVTLRVYADLFDSDLDRAAAAIHAAYSPPECGQNVGTSARDHGAPA GT:EXON 1|1-394:0| BL:SWS:NREP 1 BL:SWS:REP 13->282|VINT_BPML5|2e-11|30.1|249/371| SEG 107->118|vavadveldave| SEG 326->340|aslavsanvnvlala| SEG 366->373|aaaaihaa| RP:PDB:NREP 1 RP:PDB:REP 68->365|3crxA|2e-14|12.7|276/323| RP:PFM:NREP 1 RP:PFM:REP 200->362|PF00589|2e-06|34.2|146/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 188->360|PF00589|1.3e-29|31.1|161/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 124->163|2etvA1|1e-04|30.0|40/334|c.92.2.4| RP:SCP:REP 188->365|1aihA|4e-20|30.8|146/170|d.163.1.1| HM:SCP:REP 187->368|1a0pA2|4e-32|29.9|167/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 86 OP:NHOMOORG 67 OP:PATTERN -------------------------------------------------------------------- ------1-----1--32----2--1------1211123-2-11-1------11---1----15-21-211--1112------1----------------------------------------------------------------------------------------------------1----------111112---12-111--------------------------------------------1----------------------1--1111-------------------------------------------------------1---------------1---2--------1------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------1---------------------------------------------------------------------------------------1------------------------------------1--1----------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------1------------1-----1---------------------------------1-1--------1---------1----------------- STR:NPRED 298 STR:RPRED 75.6 SQ:SECSTR ###################################################################cHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHcGGccHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHHHHHHHHTccHHHHHHcccTTEEEcccccEEHHHHHHHEcccccccccccccccccccHHHHHHHHHHHHHHHcGGGcTTcccccEEcTTccEEccccHHHccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHHcTTccccccH############################# DISOP:02AL 1-4, 57-58, 375-394| PSIPRED ccccccccEEEEEcccccEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHccHHHccccccEEEEEcccEEccccccccccccccEEEEEccHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccc //