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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55097.1
DDBJ      :             putative phage head
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  37/915 : Eukaryota  0/199 : Viruses  5/175   --->[See Alignment]
d.183.1
:389 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   136->384 2fteF PDBj 8e-23 30.9 %
:RPS:PDB   170->385 3e8kG PDBj 2e-24 24.8 %
:RPS:SCOP  117->385 1ohgA  d.183.1.1 * 1e-27 27.0 %
:HMM:SCOP  112->390 1ohgA_ d.183.1.1 * 3.4e-43 26.0 %
:RPS:PFM   199->385 PF05065 * Phage_capsid 5e-07 30.1 %
:HMM:PFM   128->385 PF05065 * Phage_capsid 4.1e-39 28.2 248/276  
:BLT:SWISS 149->384 COAT_BPHK7 3e-22 30.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55097.1 GT:GENE BAD55097.1 GT:PRODUCT putative phage head GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 257031..258200 GB:FROM 257031 GB:TO 258200 GB:DIRECTION + GB:PRODUCT putative phage head GB:PROTEIN_ID BAD55097.1 LENGTH 389 SQ:AASEQ MLEQVELEMAEQVELEMAEQVELEMAGRDMTGDEQRAFDEAMTKGRGLLDRIKSGKRDLEVLEAAKGLASEIGRPNDPNAPSGKHLSLTGAAVKAMARQIADRMAPANSTGRKALLPAGATVTDVPMVAESPIALGRPALSLLDALTLRSQPPKYKYLRQNTRTNNAAPVAQGATKPTSVLGLAEIDAELRVIAHMSEPIPKYWLEDSDALELFVADELLFGLRQAIEAQVIAGDGTGENMTGLVNVSGGQAQAFATDLLTTTRSAVTRLETAGHTAGLFVLSPADWEALELARTDTAGQLELGGPVDRAARKLWGVPVAVALGLPAKTGLLLDLTAVALSTDEAGIETKWSENVSDDFSKNQIRARVEGRFELDVFQPLGIAKIATAE GT:EXON 1|1-389:0| BL:SWS:NREP 1 BL:SWS:REP 149->384|COAT_BPHK7|3e-22|30.9|230/100| BL:PDB:NREP 1 BL:PDB:REP 136->384|2fteF|8e-23|30.9|243/264| RP:PDB:NREP 1 RP:PDB:REP 170->385|3e8kG|2e-24|24.8|214/247| RP:PFM:NREP 1 RP:PFM:REP 199->385|PF05065|5e-07|30.1|183/271|Phage_capsid| HM:PFM:NREP 1 HM:PFM:REP 128->385|PF05065|4.1e-39|28.2|248/276|Phage_capsid| RP:SCP:NREP 1 RP:SCP:REP 117->385|1ohgA|1e-27|27.0|267/280|d.183.1.1| HM:SCP:REP 112->390|1ohgA_|3.4e-43|26.0|277/0|d.183.1.1|1/1|Major capsid protein gp5| OP:NHOMO 47 OP:NHOMOORG 42 OP:PATTERN -------------------------------------------------------------------- ------1--------------2--------------21----------------------------------111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------1------------------------------21-2--1-11111111--------------------------------------------1-----------------1-1---------------------1-----------------------------------------------------------------------------------------------------1------1-1-------------------1------------------------------------------1-----1------------------1-------------------------------------------------1---1-------1-----1--2----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------1-11-------1---------------1------ STR:NPRED 250 STR:RPRED 64.3 SQ:SECSTR #######################################################################################################################################ccccccTTTTcEEEccccEEEEEEcccccccEEEEcccccccccccEEEEEEEEcEEEEEEEEEEcTTTTccHHHHHHHTTTTHHHHHHHHHHHHHHcccccTTccccHHHHcEGGGccTTccHHHHHHHHHHHHHTTTccccEEEccTTTTHHHHTccEETTTEEcccccccccccccTTccccccTTccTTEEEEEcHHHHcEEEEEEEEEEEEEcccTTTTTcccEEEEEEEEEEEccccGGGEEEE#### DISOP:02AL 1-3, 28-38, 63-86| PSIPRED cccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccEEccccccccHHHcccccccccccccHHHHHHHHcccEEEEEEccEEEcccccEEEEEEEcccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHcccccEEEcccccccccccccccccEEcccccccEEEEEEEccEEEEEEEccEEEEEEcccccccccccEEEEEEEEEccccccHHHHHEEcccc //