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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55100.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:420 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   35->99 2axuC PDBj 3e-11 19.6 %
:RPS:SCOP  35->102 1s4kA  a.35.1.6 * 8e-09 14.3 %
:HMM:SCOP  28->112 1x57A1 a.35.1.12 * 3e-08 32.1 %
:HMM:PFM   38->95 PF01381 * HTH_3 8.9e-09 41.2 51/55  
:HMM:PFM   267->295 PF08590 * DUF1771 5e-05 37.9 29/66  
:HMM:PFM   103->123 PF10518 * TAT_signal 0.00013 38.1 21/26  
:HMM:PFM   202->216 PF08238 * Sel1 0.00054 53.3 15/39  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55100.1 GT:GENE BAD55100.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(260589..261851) GB:FROM 260589 GB:TO 261851 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD55100.1 LENGTH 420 SQ:AASEQ MRLHEASGTGGGIQRSGKRSGRSGWQAEYMSADTGRLIRQLRVAKGWSQGRLASELSKLSGCTMTREYISRHWESGKTEPSAFWLRHLAAALDCPQELLEADVNRRRFLSHLAATSIAPAVASDLLSQGFSTRLHASGPTVEEWEATLARYGTDYMSQGAATIQQRLAADLVVLQQQLDSPRMWAIAARLMTLFAKTYPGSDGNKAIAWYRMAAEAADRSEDIDIRVWVRGRAAIALGYEGAALPVAHTFADQALAISERSSLGRLNSLWGKAHAAVLEGDVRTARELVDEGRREFDRSYSEEQTSDYAVPWWRVNVFLSLLAARLGDEKLAVQAQEDARAELPAQLPRFATHLAMHRGLMLVRAGDRQQGVALARAALDALPPEKHSLTLRMLMSEIAGVGNPGSARRFTTDPRLDRTT GT:EXON 1|1-420:0| SEG 164->179|qqrlaadlvvlqqqld| SEG 373->382|alaraaldal| RP:PDB:NREP 1 RP:PDB:REP 35->99|2axuC|3e-11|19.6|56/295| HM:PFM:NREP 4 HM:PFM:REP 38->95|PF01381|8.9e-09|41.2|51/55|HTH_3| HM:PFM:REP 267->295|PF08590|5e-05|37.9|29/66|DUF1771| HM:PFM:REP 103->123|PF10518|0.00013|38.1|21/26|TAT_signal| HM:PFM:REP 202->216|PF08238|0.00054|53.3|15/39|Sel1| RP:SCP:NREP 1 RP:SCP:REP 35->102|1s4kA|8e-09|14.3|63/120|a.35.1.6| HM:SCP:REP 28->112|1x57A1|3e-08|32.1|78/0|a.35.1.12|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 95 STR:RPRED 22.6 SQ:SECSTR ###############cccccccccccccHHHHHHHHHHHHHHHHTTccHHHHHTTTcTTTTTTccHHHHHHHHTTTcccccHHHHHHHHHHHTccHHHHHHHHHHHHHHc###################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-26, 418-420| PSIPRED ccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHcccccccEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHccHHEEEEccHHHHHcccHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccc //