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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55102.1
DDBJ      :             putative membrane protein
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  132/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:764 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  190->362 1iwgA7  f.35.1.1 * 3e-08 14.0 %
:RPS:SCOP  560->723 1iwgA7  f.35.1.1 * 8e-11 17.2 %
:HMM:SCOP  139->367 1iwgA8 f.35.1.1 * 1e-24 21.5 %
:HMM:SCOP  482->727 1iwgA8 f.35.1.1 * 6.9e-30 23.9 %
:RPS:PFM   208->364 PF03176 * MMPL 1e-17 33.3 %
:RPS:PFM   470->723 PF03176 * MMPL 5e-26 37.3 %
:HMM:PFM   45->368 PF03176 * MMPL 2.2e-52 31.1 299/333  
:HMM:PFM   464->728 PF03176 * MMPL 3.8e-40 26.6 256/333  
:BLT:SWISS 1->763 YDFJ_BACSU e-107 39.7 %
:PROS 144->157|PS00584|PFKB_KINASES_2
:TM
:REPEAT 2|7->320|388->679
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55102.1 GT:GENE BAD55102.1 GT:PRODUCT putative membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(265454..267748) GB:FROM 265454 GB:TO 267748 GB:DIRECTION - GB:PRODUCT putative membrane protein GB:PROTEIN_ID BAD55102.1 LENGTH 764 SQ:AASEQ MSVYLYRFGKFAFRRKWIVLPAWLVLLVVVSGLGAQLGKPMSNDFSMPSLPSERANEILDKHFPGASEAFQLDAVTGTYVIAAPEGQQLTDPANRDAVKALVDRLDQLDIVDHSKPVTDPITAAEAMGCLANPDPATCSGAPLNVLSADDPNSVAVISVPFTIPGFADITDEDRQKATAVADAARAAGLTVEMSGSIAQENVQPGGKSEMIGMIVALFVMIIGFGAVVAAFVPIITALVGVGAASSVVMLGTSVIEIPSFTSFLTLMIGIALSIDYALFIVSRYKHELAVQDSPEEAAGIALGTAGSAVVFAGLTVIIALAGLSIVGVQFLTFMGLGGAIAAAFAVITAVTLMPALLGAFGRFLFKPKLPLVAKHDPEDDSVVTNGMRFGKLIGKAPWVALVLSVVALGALAAPALNLNLGLPGEDSMPPETTVRKAYELRTEGFGEGSNGVLNIVADLSAVPAEQRQEAVNALRDRLASYPEMDYVTAPQFSQDGAGVMLDGVPKAGPNNQATKDLVREARDAESELKDRYGMEYGVTGATAIYADIDHVLLSKIAPYLAIVAGAAFLLLILVFRSILVPLTAALGFLLSMAATFGATVLIFQEGALGLIEDPHPLVSFLPIMLIGLVFGLAMDYQVFLVTRMREEFVHGKSPKEAVVSGYHHGARVVTAAAIIMISVFASFILESDVTVKSFGFALAAGVLFDAFVVRMVVIPSLLVIMGKWSWWIPKWLDRVLPDIDVEGTKLRAIQNGSAEQPKEPVGVA GT:EXON 1|1-764:0| BL:SWS:NREP 1 BL:SWS:REP 1->763|YDFJ_BACSU|e-107|39.7|720/724| PROS 144->157|PS00584|PFKB_KINASES_2|PDOC00504| TM:NTM 12 TM:REGION 17->39| TM:REGION 208->230| TM:REGION 235->257| TM:REGION 262->283| TM:REGION 303->325| TM:REGION 340->362| TM:REGION 396->418| TM:REGION 552->574| TM:REGION 584->606| TM:REGION 620->642| TM:REGION 665->687| TM:REGION 698->720| NREPEAT 1 REPEAT 2|7->320|388->679| SEG 24->34|lvllvvvsglg| SEG 177->187|atavadaaraa| SEG 239->248|vgvgaassvv| SEG 336->352|lggaiaaafavitavtl| SEG 399->423|valvlsvvalgalaapalnlnlglp| RP:PFM:NREP 2 RP:PFM:REP 208->364|PF03176|1e-17|33.3|157/284|MMPL| RP:PFM:REP 470->723|PF03176|5e-26|37.3|241/284|MMPL| HM:PFM:NREP 2 HM:PFM:REP 45->368|PF03176|2.2e-52|31.1|299/333|MMPL| HM:PFM:REP 464->728|PF03176|3.8e-40|26.6|256/333|MMPL| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| RP:SCP:NREP 2 RP:SCP:REP 190->362|1iwgA7|3e-08|14.0|169/199|f.35.1.1| RP:SCP:REP 560->723|1iwgA7|8e-11|17.2|151/199|f.35.1.1| HM:SCP:REP 139->367|1iwgA8|1e-24|21.5|219/223|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 482->727|1iwgA8|6.9e-30|23.9|218/223|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 555 OP:NHOMOORG 156 OP:PATTERN -----11111111112-111111----------------------------------12--211---- ---1D234444413LCEAA-AE44JC99AA94DB9C7989266G42211321322112--34815338D71-----------1----------------------------------------------------------111-1-------------------------------------111-----112222221223222222--2212222--22-22212221-2-111111111111112-112---------------------1---------------------------------------------------11-----------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------2-----------------------------------------------------------------------------------------------------B------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 63-69, 143-148, 374-385, 427-432, 482-491, 741-761, 763-764| PSIPRED cHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccHHHHccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEccHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc //