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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55103.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  38/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:197 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->111 3dcfB PDBj 1e-13 38.6 %
:RPS:PDB   16->172 2dg8C PDBj 6e-16 15.9 %
:RPS:SCOP  16->75 1z77A1  a.4.1.9 * 3e-16 25.0 %
:HMM:SCOP  12->90 2fbqA1 a.4.1.9 * 6e-16 39.2 %
:RPS:PFM   20->66 PF00440 * TetR_N 2e-09 48.9 %
:HMM:PFM   20->66 PF00440 * TetR_N 4.6e-20 51.1 47/47  
:BLT:SWISS 17->78 ICAR_STAAW 8e-09 40.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55103.1 GT:GENE BAD55103.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 267953..268546 GB:FROM 267953 GB:TO 268546 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55103.1 LENGTH 197 SQ:AASEQ MAQPHAPESVIAGSGTKMAIRDAAVRLFTSKGFEQTSLREVADAVGITKASLYYHYPSKLDLLLAIVDPIVDHLRSVVDGLESVPHDPNNVRRVLGDYLRGMIRHRDAGTLCVRDTAAIFNAMADRYPDVMNANRLLAEWLAGPRPTDENRVRASAALEVLGVALLSEEFVPGVSDELLEATLLDAATAVLAAGATG GT:EXON 1|1-197:0| BL:SWS:NREP 1 BL:SWS:REP 17->78|ICAR_STAAW|8e-09|40.3|62/186| SEG 176->196|delleatlldaatavlaagat| BL:PDB:NREP 1 BL:PDB:REP 24->111|3dcfB|1e-13|38.6|88/181| RP:PDB:NREP 1 RP:PDB:REP 16->172|2dg8C|6e-16|15.9|157/174| RP:PFM:NREP 1 RP:PFM:REP 20->66|PF00440|2e-09|48.9|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 20->66|PF00440|4.6e-20|51.1|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 16->75|1z77A1|3e-16|25.0|60/75|a.4.1.9| HM:SCP:REP 12->90|2fbqA1|6e-16|39.2|79/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 49 OP:NHOMOORG 39 OP:PATTERN --------------------------------------------1----------------------- ----2111111---3-1-------14-----12---2-11-11211---11---------11--11111-1----------------------------------------------------------------------------------------------------------------1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1---------1----------------1-----------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 171 STR:RPRED 86.8 SQ:SECSTR ###ccccHHHHcHcHccHHHHHHHHHHHHHHcGGGccHHHHHHHHTccTHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcGGGHHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHHHHHHTcccccccc####################### DISOP:02AL 1-19, 196-197| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccc //