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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55105.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:578 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   2->570 2hydA PDBj 8e-67 28.0 %
:RPS:PDB   2->571 3b60A PDBj 4e-58 24.8 %
:RPS:SCOP  1->316 2hydA2  f.37.1.1 * 1e-42 18.7 %
:RPS:SCOP  348->575 1b0uA  c.37.1.12 * 3e-36 26.7 %
:HMM:SCOP  6->324 1pf4A2 f.37.1.1 * 5.6e-66 30.8 %
:HMM:SCOP  313->555 1pf4A1 c.37.1.12 * 1.2e-62 33.7 %
:RPS:PFM   20->286 PF00664 * ABC_membrane 3e-21 28.9 %
:RPS:PFM   375->500 PF00005 * ABC_tran 2e-11 42.0 %
:HMM:PFM   22->288 PF00664 * ABC_membrane 2.7e-39 24.1 266/275  
:HMM:PFM   375->498 PF00005 * ABC_tran 1.3e-22 35.7 112/118  
:HMM:PFM   471->541 PF02463 * SMC_N 1.8e-06 26.8 71/220  
:HMM:PFM   353->388 PF03193 * DUF258 2e-05 25.7 35/161  
:BLT:SWISS 1->570 Y1304_MYCBO e-138 47.5 %
:PROS 472->486|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55105.1 GT:GENE BAD55105.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 269248..270984 GB:FROM 269248 GB:TO 270984 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD55105.1 LENGTH 578 SQ:AASEQ MLIRLLRTYLSPYRAQLAGVVALQLVSVIAMLYLPSLNADLIDNGVTKGDIDYIWHTGLWMLAVTAVQIVASASSVFLGAQAAMSAGRDLRAALVHRVGTFSAREVGLFGAPSLITRNTNDVQQVQLLVVMSVTVLVMAPIMCVGGIIMALREDLKLSWLLLIAVPALALAMGLVVARLVPGFREMQARIDVVNRVLREQITGIRVVRAFVRERQETWRFGLANTDLTEASLRVGRLMALMFPVVMLISNVTTVAVIWFGGHLIDDGELQIGSLTAMLSYIMQILMAVMMASFLAMMAPRAAVSADRIGAVLTTESSVVPPEFPKPFAGDPGRVEFAAAEFAFPGAEKPVLRGIRFTVEPGTTTAIVGSTGAGKTTLLNLIPRLIDVTAGAVYVGGTDVRELDMELLREQIGLVPQKAYLFSGTVASNLRYGRPDATDEELWRALEIAQAADFVRDMPQGLETPVAQGGTTVSGGQRQRLAIARALVRRPRVYLFDDSFSALDVATDARLREALRPETRDASVIIVAQRVSTIRDADQIIVLEDGEMAGIGTHEQLLRDCAEYQEIVASQLSAQEEVR GT:EXON 1|1-578:0| BL:SWS:NREP 1 BL:SWS:REP 1->570|Y1304_MYCBO|e-138|47.5|568/582| PROS 472->486|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 6 TM:REGION 15->37| TM:REGION 58->80| TM:REGION 127->149| TM:REGION 159->181| TM:REGION 238->260| TM:REGION 277->299| SEG 122->137|vqqvqllvvmsvtvlv| SEG 160->171|llliavpalala| SEG 335->347|efaaaefafpgae| BL:PDB:NREP 1 BL:PDB:REP 2->570|2hydA|8e-67|28.0|567/578| RP:PDB:NREP 1 RP:PDB:REP 2->571|3b60A|4e-58|24.8|568/572| RP:PFM:NREP 2 RP:PFM:REP 20->286|PF00664|3e-21|28.9|266/274|ABC_membrane| RP:PFM:REP 375->500|PF00005|2e-11|42.0|112/123|ABC_tran| HM:PFM:NREP 4 HM:PFM:REP 22->288|PF00664|2.7e-39|24.1|266/275|ABC_membrane| HM:PFM:REP 375->498|PF00005|1.3e-22|35.7|112/118|ABC_tran| HM:PFM:REP 471->541|PF02463|1.8e-06|26.8|71/220|SMC_N| HM:PFM:REP 353->388|PF03193|2e-05|25.7|35/161|DUF258| GO:PFM:NREP 7 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 1->316|2hydA2|1e-42|18.7|315/323|f.37.1.1| RP:SCP:REP 348->575|1b0uA|3e-36|26.7|225/258|c.37.1.12| HM:SCP:REP 6->324|1pf4A2|5.6e-66|30.8|305/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 313->555|1pf4A1|1.2e-62|33.7|243/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 38345 OP:NHOMOORG 1174 OP:PATTERN FFB4CBBCGFFDHDJCS8CC9AFNhJNSYKTMC5B986CAEB7RUKMbGKwhT7FKHGJFGDC9J146 NMZD*XOTggeRQQTNPLL-LW77S*MMMMMLcegfk***LjP*eteahbVGmnmKRXAAepfc*cu***XUSRRlVUWG*XRB499AMNIF4H9BG--BCKFDCUFPKL33333336856666AQLGNUKIPNQOTVWgrBBDqLccdjXWZQXQQRFKHPHWbTb***SEQEGDEAOFFFCULQFCXR6SRiwwyuzy**g****w**rllis***Qej*ucfmmnllk**SWXXUXURVUXXWVTQPMOQriVayzaLaUiomMN**VRMSUXUUZaZeojdklmmmqnnlilqlmlUWVUUVWWYWWUVqhibaZkjlebwlwsvxv***xYzZZlqqOYYU*UcdivfcLG**iTLPUTIUdXaaJOPSDQMMMGHGJEJQK***PPb*x**nqqrrrotnnr*-Ye*YU*cz**K9**************FFH*v*zrz**y*POPPPPPPhQTEMaLp666555557657557857776766785A4ECEHBCo**m*y*****niijfuu**tpqpZr*z*su*f9DihbnWggj*q*v**RWZIPFJZKEGFEGDEPNJSSWPd*IZPZWPQfPOWBTUTOMPWNRHHMHlkOsEFEECCCCCCD657877877CLCCEHFZafKfJOAKGeMNRQMIQQJLLNLPRTPOP3-CCOJF222222vh**Oqcgkklhlimee-jgefiejeihjnjdefedc*****bgSZdXZYZZaYZZXZXZYvaWaaaadM3otwuzxuvuxzx22BB79777HHJHCBmbyQOOQTPBJJIIMFGPKMONMENFIObXdfddi*p*fnrehSxz*9AA8AAA9AGVcdndffeeflmhiIKOHLIHJKMAAAA33IJIIBCAC35454252*5S87769-548289735368B826556KUaFBVeWYX7SJ 6766XQM-nN97XfULQRKNSWUgWhSKKDGHHTVRFQPNPNLEEFUPRcaaghOKWMMLKLHFC8A92HA5FDICC2BF9DCCJJ69-UjFQRPQIIIMDBJSRK6L*l*ZkYzhuPJRMNaKxvO*I**q1yW*QOOLlOR*hHQNOHhKH*NaUUtOj*MpSSSvXg*pl*eGKKE*CDCKGvnm*Jy*IK*hpub ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 315-329, 570-578| PSIPRED cHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccEEccccEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHccccccccccccccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcccc //