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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55123.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  213/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.55.1
:421 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   46->357 1z05A PDBj 1e-18 27.3 %
:RPS:PDB   37->359 1bg3A PDBj 2e-21 10.9 %
:RPS:SCOP  39->99 2hoeA1  a.4.5.63 * 1e-05 29.1 %
:RPS:SCOP  106->219 1woqA1  c.55.1.10 * 4e-07 18.4 %
:RPS:SCOP  235->391 2aa4A2  c.55.1.10 * 2e-13 25.7 %
:HMM:SCOP  29->99 1z6rA1 a.4.5.63 * 1.5e-08 37.1 %
:HMM:SCOP  100->224 1z6rA2 c.55.1.10 * 1.1e-16 34.4 %
:HMM:SCOP  230->419 1z6rA3 c.55.1.10 * 6.8e-22 24.5 %
:RPS:PFM   107->283 PF00480 * ROK 3e-06 33.3 %
:HMM:PFM   107->291 PF00480 * ROK 4.9e-14 23.9 176/179  
:BLT:SWISS 29->417 Y495_MYCBO 4e-85 48.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55123.1 GT:GENE BAD55123.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 288707..289972 GB:FROM 288707 GB:TO 289972 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55123.1 LENGTH 421 SQ:AASEQ MSIPTLERSVARVAPARVRTPRPVLPPELRISDNPAAAVLRAATGGPVSRDNAARTTGLSIATVNRQVSALLAAGLLRERPDLTTPGAVGRPRVPFEVDHDSYLTLGIHIGAAATKIVAADLRGRIIGGLAIATPQTGQDFATTTIARSAKAFLRRWHRRRALWAGVAIGGRVDPVSGSVDHPALGWQGAQLGAVLAEVLELPISVAPHVEAMAASELLLPTPQPDRAHERGAGLFFYVRETAGVAVTLDGRVHTPSNGPGSIAHLPTGSDVVCACGRTGCLEATVGDRALVARAVGRGIIPAHNGTGGSTIADLHRAAAEGSTAAHELLVERATILGNAVALVSDMLNPDRVILGGQAFTGYRPGVAHVAKAFRSASALPPTDIRISGFGGKVQEFAAVVASLSALYADPLAAMRRLAVD GT:EXON 1|1-421:0| BL:SWS:NREP 1 BL:SWS:REP 29->417|Y495_MYCBO|4e-85|48.7|384/438| SEG 8->27|rsvarvaparvrtprpvlpp| SEG 154->165|lrrwhrrralwa| SEG 398->407|aavvaslsal| BL:PDB:NREP 1 BL:PDB:REP 46->357|1z05A|1e-18|27.3|300/396| RP:PDB:NREP 1 RP:PDB:REP 37->359|1bg3A|2e-21|10.9|294/902| RP:PFM:NREP 1 RP:PFM:REP 107->283|PF00480|3e-06|33.3|168/181|ROK| HM:PFM:NREP 1 HM:PFM:REP 107->291|PF00480|4.9e-14|23.9|176/179|ROK| RP:SCP:NREP 3 RP:SCP:REP 39->99|2hoeA1|1e-05|29.1|55/58|a.4.5.63| RP:SCP:REP 106->219|1woqA1|4e-07|18.4|114/129|c.55.1.10| RP:SCP:REP 235->391|2aa4A2|2e-13|25.7|148/170|c.55.1.10| HM:SCP:REP 29->99|1z6rA1|1.5e-08|37.1|70/0|a.4.5.63|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 100->224|1z6rA2|1.1e-16|34.4|125/0|c.55.1.10|2/2|Actin-like ATPase domain| HM:SCP:REP 230->419|1z6rA3|6.8e-22|24.5|188/0|c.55.1.10|1/1|Actin-like ATPase domain| OP:NHOMO 317 OP:NHOMOORG 214 OP:PATTERN -------------------------------------------------------------------- --1-51212221-111111-11--1111111111111244-113141-31--322--3--1-231223122-111212--1-------11----------1------1-2---------------------------11-----1-------------------------------------------12-1-----------------1-11----------1-------1------------------------------------------------------------11111-11--------------------------------------11-----------1-1------1-1--122--------1---------------------11111111111--------11---2--233-34312-----------------------1------------------------------------------------------------11-------------------------1------------------------------------------1-----------1-----------------------------221----------------------------------------212121-1111111111-1111111111111111112222231212122222222222222311111121-2------------------------------------------------------1----------------------------22222222222222-------------------------------------------------------------1----1-1---- ----------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 368 STR:RPRED 87.4 SQ:SECSTR #############################ccHHHHHHHHHHHHHHHHHHHHHHTGGGcccHHHHHHHHHHHHHHHHcTTTGGGcccccEEcccccccccccccEEEEEEEccccEEEEEEEcccEEEccEEcccTTTTTccHHHHHHHHHHHHHHHHHTccccccEEEEEEcccEEcccTTccEEccTTccHHHHHHHHHHHHTccccEEEEEEcHHHHHHHHHHHHHHcTTEEEEEEEcccEEEEEEEEGGGcTTcccccEEEEEcEcGccGGGTTTTTTTTTTccTTHHHHHHTcccGGTcTTTTTccHHHHHHHHTcccTTccTTHHHHcTTTHHHHHHHHHHHHHHTTccGGGccHcTTcccHHHTTccccHHHHHHHHHHHHHHHHHHHHEE######################## DISOP:02AL 1-6, 16-35, 81-93| PSIPRED cccccccccHHcccccccccccccccHHHHHHccHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccccccccccccEEEEEEcccEEEEEEEEEccEEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEccccEEEEcccccccccHHHHHHHHHcccEEEEccHHHHHHHHHHHccccccccccccEEEEEEEccccEEEEEEccEEEccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcc //