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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55126.1
DDBJ      :             putative DNA polymerase III gamma subunit
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  906/915 : Eukaryota  145/199 : Viruses  1/175   --->[See Alignment]
a.80.1c.37.1
:825 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->361 1xxhB PDBj 9e-64 40.1 %
:RPS:PDB   14->221 1a5tA PDBj 3e-24 28.6 %
:RPS:SCOP  2->242 1jr3A2  c.37.1.20 * 7e-74 50.0 %
:RPS:SCOP  267->362 1jqjC1  a.80.1.1 * 7e-08 16.3 %
:HMM:SCOP  1->233 1jr3A2 c.37.1.20 * 1.1e-51 28.6 %
:HMM:SCOP  243->361 1jr3A1 a.80.1.1 * 1.1e-26 40.0 %
:RPS:PFM   3->69 PF05496 * RuvB_N 4e-06 39.4 %
:RPS:PFM   268->363 PF12169 * DNA_pol3_gamma3 2e-15 44.7 %
:HMM:PFM   235->362 PF12169 * DNA_pol3_gamma3 2.1e-18 31.7 126/143  
:HMM:PFM   39->169 PF00004 * AAA 7e-13 27.6 105/130  
:HMM:PFM   6->70 PF05496 * RuvB_N 1.2e-08 36.9 65/234  
:BLT:SWISS 1->400,800->824 DPO3X_MYCTU e-165 77.2 %
:BLT:SWISS 568->689 DPO3X_MYCTU 2e-13 31.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55126.1 GT:GENE BAD55126.1 GT:PRODUCT putative DNA polymerase III gamma subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 292915..295392 GB:FROM 292915 GB:TO 295392 GB:DIRECTION + GB:PRODUCT putative DNA polymerase III gamma subunit GB:PROTEIN_ID BAD55126.1 LENGTH 825 SQ:AASEQ MALYRKYRPATFAEVVGQEHVTEPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLNCEQGPTSTPCGVCASCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPAHLIFIFATTEPDKVLPTIRSRTHHYPFRLLPPATMRGLLGRICEQEHVTVEEAVYPLVIRAGGGSPRDSLSVLDQLLAGAGPEGVTYHRAVALLGVTDVALIDDAVQALADDDGAALFGTVDRVMEAGHDPRRFAVDLLERFRDLILLRAVPDAVERGLVAGPEDVLDRMREQAERIGPATLTRYAELLHEGLGEMRGATAPRLLLEVVCARMLLPAVSDAESATLQRLERLERGMAGGVFTPPTAPHPSGEAGPAVPRPGNEPPRRRGAEALAALKQSKAMDDEGAAGSPRRAAQAAASAETGSDPVGRAPASTGGAAPAGERQPGDAEPNPQTGAGTVEPGPEAAAAPISARAPQRAEAVDVRRSDAANIASDVAGEPARASDDRSPDAAEVRAPGDGDSGATSRPEVGRAIPAHPNGAADRVPESAGAQSDPSDHRLAEPASAVRDDELLRAVEGAWADIRAKVREYSATMQAMLSGASVARIEGSAIVFAHPSPVLAGRLSEPRNIDAVRAAVRAVLGHDHEIRWESGAAVKPAPAANRGKAGGAPANRGGQARGQGAARFSRPSQAGGAAAAEAAGRAKRSAPGGDDDIPPPDYPDLPDDPGPGDYPPPDPAQTDGADGGYPPAAVPGPLTAEEEQEMLAEAARPVAPEDRRDPDEVALELLRAELGATRLDG GT:EXON 1|1-825:0| BL:SWS:NREP 2 BL:SWS:REP 1->400,800->824|DPO3X_MYCTU|e-165|77.2|425/578| BL:SWS:REP 568->689|DPO3X_MYCTU|2e-13|31.7|122/578| SEG 245->264|dvaliddavqaladddgaal| SEG 405->416|prpgnepprrrg| SEG 433->448|gaagsprraaqaaasa| SEG 456->469|grapastggaapag| SEG 484->506|agtvepgpeaaaapisarapqra| SEG 527->539|parasddrspdaa| SEG 693->711|aggapanrggqargqgaar| SEG 713->763|srpsqaggaaaaeaagrakrsapggdddipppdypdlpddpgpgdypppdp| SEG 784->795|aeeeqemlaeaa| BL:PDB:NREP 1 BL:PDB:REP 3->361|1xxhB|9e-64|40.1|352/364| RP:PDB:NREP 1 RP:PDB:REP 14->221|1a5tA|3e-24|28.6|203/324| RP:PFM:NREP 2 RP:PFM:REP 3->69|PF05496|4e-06|39.4|66/232|RuvB_N| RP:PFM:REP 268->363|PF12169|2e-15|44.7|94/136|DNA_pol3_gamma3| HM:PFM:NREP 3 HM:PFM:REP 235->362|PF12169|2.1e-18|31.7|126/143|DNA_pol3_gamma3| HM:PFM:REP 39->169|PF00004|7e-13|27.6|105/130|AAA| HM:PFM:REP 6->70|PF05496|1.2e-08|36.9|65/234|RuvB_N| GO:PFM:NREP 3 GO:PFM GO:0006281|"GO:DNA repair"|PF05496|IPR008824| GO:PFM GO:0006310|"GO:DNA recombination"|PF05496|IPR008824| GO:PFM GO:0009378|"GO:four-way junction helicase activity"|PF05496|IPR008824| RP:SCP:NREP 2 RP:SCP:REP 2->242|1jr3A2|7e-74|50.0|238/240|c.37.1.20| RP:SCP:REP 267->362|1jqjC1|7e-08|16.3|92/117|a.80.1.1| HM:SCP:REP 1->233|1jr3A2|1.1e-51|28.6|231/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 243->361|1jr3A1|1.1e-26|40.0|115/126|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 1714 OP:NHOMOORG 1074 OP:PATTERN ------------------2222211111-1---111------11-21-1------------111---- 1121222222222222222-22222222222222222222212222222222222222112222222222222222222221221112111111221-11111111211111111111111111222212112211221222222212311111122111111111232111111111111112221122212222222223222224222222222222232222222222222222222122222222222222122122222222222221112222222222222222222222222222222232222222222222222211111112212122111111212112222222222222122222111122222122222112222122222111111111111-24322221111-2222222222121222212111112222222222212222222111111111111111111111111211111211212222232222222222221122222232121111122211322322221212311122333333311132222222112111111122222222222122222111111111111111-111111111112222212222122222112222212212112-122111111111-232111111111111-11111111111111111121112222121122212212222221111111121222222222222112211111222232322323222221113112111111211122111122221222212221111111112212222222222111111111111111111211122221111111111111111-11111111111111111111211111111111 1-1111------2211---1211---1111-------111111111--1-211222-111113-11111111----21111111--21-242-211211111211--2-2423222--1--2112212-121-2-2111-21121-11--21-11122211213-3-11141-1-2222-22222553A1542121-11 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------2- STR:NPRED 359 STR:RPRED 43.5 SQ:SECSTR ccHHHHTccccGGccGGGHHHHHHHHHHHHTTccccEEEEEccTTccHHHHHHHHHHHHTcccccTTccccccHHHHHHHHTccTTEEEcccTTcccccHHHHHHHHHHTTcccTTcccEEEEEccGGGccHHHHHHHHHHHTcccTTEEEEEEEccGGGccHHHHTTcEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHTTTcHHHHHHTTccHcccccccHHHHHHHHHHTTcTTccGGGccHHHHHHHHHHHHHHHHHHHHTTcccccccTTTTccGGGGccGGGcccccccHGGTT##HHHHHHHHHcccccccGGGHHHHHHHHHTTccGGGcccHHHHHHHHHHHHH################################################################################################################################################################################################################################################################################################################################################################################################################################################################################ DISOP:02AL 363-629, 642-661, 678-769, 771-804, 824-825| PSIPRED ccHHHHHccccHHHHcccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEcccccHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHccccccc //