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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55136.1
DDBJ      :             hypothetical protein
Swiss-Prot:Y294_NOCFA   RecName: Full=UPF0133 protein NFA_2940;

Homologs  Archaea  0/68 : Bacteria  196/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.222.1
:110 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->100 1j8bA PDBj 5e-10 43.8 %
:RPS:SCOP  42->101 1j8bA  d.222.1.1 * 2e-11 39.0 %
:HMM:SCOP  13->107 1pugA_ d.222.1.1 * 1.7e-27 50.5 %
:RPS:PFM   34->101 PF02575 * DUF149 6e-15 51.5 %
:HMM:PFM   14->105 PF02575 * DUF149 6.5e-32 52.2 92/93  
:BLT:SWISS 1->110 Y294_NOCFA 2e-43 100.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55136.1 GT:GENE BAD55136.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 308250..308582 GB:FROM 308250 GB:TO 308582 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55136.1 LENGTH 110 SQ:AASEQ MQPGGQFDMQQLLAQAQQMQEAVMQAQAEIAATEVEGQAGGGLVKATIKATGEVQALTIDPKVVDPEDVEGLQDLVIGAINDAMARAQQLAAERLGPLAGGGSMPGLPGF GT:EXON 1|1-110:0| SW:ID Y294_NOCFA SW:DE RecName: Full=UPF0133 protein NFA_2940; SW:GN OrderedLocusNames=NFA_2940; SW:KW Complete proteome. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->110|Y294_NOCFA|2e-43|100.0|110/110| COIL:NAA 34 COIL:NSEG 1 COIL:REGION 6->39| SEG 10->32|qqllaqaqqmqeavmqaqaeiaa| BL:PDB:NREP 1 BL:PDB:REP 34->100|1j8bA|5e-10|43.8|64/85| RP:PFM:NREP 1 RP:PFM:REP 34->101|PF02575|6e-15|51.5|68/93|DUF149| HM:PFM:NREP 1 HM:PFM:REP 14->105|PF02575|6.5e-32|52.2|92/93|DUF149| RP:SCP:NREP 1 RP:SCP:REP 42->101|1j8bA|2e-11|39.0|59/92|d.222.1.1| HM:SCP:REP 13->107|1pugA_|1.7e-27|50.5|91/94|d.222.1.1|1/1|YbaB-like| OP:NHOMO 197 OP:NHOMOORG 196 OP:PATTERN -------------------------------------------------------------------- -----111---1111--11-11--1111-11111111111-111---------------------1-111--------111-1--------------------------------------------1----1--111111---1-------------------------------------------11-1-1-----1--1---11-11--11--11--1--111111111------------------------------------------------------------------------------------------111---------1-1-111-111-11-1-------111---111111----1----------11---1-1-----------------------------111----------11--1111111-1-11111111111-1--1------------------------------1----111---------------11--------11-1-----11-----------11---1---------------1-1111111--1111-1-11111211-1--11-------------------------11---1-1-11-1------------------------11-----------------------------------------------------------------------------111111111111------------------111-1--11---11-----------------1----1111----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 72 STR:RPRED 65.5 SQ:SECSTR #################################EEEEEEGGGTEEEEEETTccEEEEEEcGGGccTGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccTTccc##### DISOP:02AL 1-10, 15-16, 18-19, 86-103, 109-110| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEcccEEEEEEEcccEEEEEEEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc //