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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55148.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  55/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   175->266 1al3A PDBj 2e-06 31.5 %
:RPS:PDB   6->105 1b9nA PDBj 3e-06 11.1 %
:RPS:PDB   157->284 1al3A PDBj 5e-08 24.2 %
:RPS:SCOP  6->105 1b9mA1  a.4.5.8 * 8e-05 11.0 %
:RPS:SCOP  92->284 1i69A  c.94.1.1 * 2e-15 21.2 %
:HMM:SCOP  6->117 1b9mA1 a.4.5.8 * 1.2e-21 43.8 %
:HMM:SCOP  92->302 1al3A_ c.94.1.1 * 2.1e-28 27.2 %
:RPS:PFM   154->250 PF03466 * LysR_substrate 4e-09 36.1 %
:HMM:PFM   92->297 PF03466 * LysR_substrate 4.3e-33 32.3 201/209  
:HMM:PFM   8->67 PF00126 * HTH_1 2.7e-18 46.7 60/60  
:BLT:SWISS 37->260 GLTC_BACSU 4e-12 27.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55148.1 GT:GENE BAD55148.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 320212..321123 GB:FROM 320212 GB:TO 321123 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55148.1 LENGTH 303 SQ:AASEQ MAGPSMSLDRLRVLRAFADRGTIAATAAALSMTPSAVSQQLKVLAKEAGVPLLEPDGRRIRLTDAGQALVVRADEVLAAMDRAAAEMAHYRESPRGRVRVALFPSGAALLLPLVLPALADSEIDVVARDEDVPPSAVPPLLADYDIVLTHRDERSGPLAGPRVSTRFLMREPIDVVVPPGHRLARQRAVAPAELAEESWLSVRGGFPVDDVLESIATVTGVQPRIAQRLNDFRAIEALVAAGYGVALMPRFAVTHPEVVVLRLSGVRAARSYDLVTRPHAERRPAVATVLAAFAEAARRITAE GT:EXON 1|1-303:0| BL:SWS:NREP 1 BL:SWS:REP 37->260|GLTC_BACSU|4e-12|27.6|214/300| SEG 16->36|afadrgtiaataaalsmtpsa| SEG 73->88|adevlaamdraaaema| SEG 107->119|aalllplvlpala| SEG 285->302|avatvlaafaeaarrita| BL:PDB:NREP 1 BL:PDB:REP 175->266|1al3A|2e-06|31.5|92/237| RP:PDB:NREP 2 RP:PDB:REP 6->105|1b9nA|3e-06|11.1|99/258| RP:PDB:REP 157->284|1al3A|5e-08|24.2|128/237| RP:PFM:NREP 1 RP:PFM:REP 154->250|PF03466|4e-09|36.1|97/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 92->297|PF03466|4.3e-33|32.3|201/209|LysR_substrate| HM:PFM:REP 8->67|PF00126|2.7e-18|46.7|60/60|HTH_1| RP:SCP:NREP 2 RP:SCP:REP 6->105|1b9mA1|8e-05|11.0|100/122|a.4.5.8| RP:SCP:REP 92->284|1i69A|2e-15|21.2|184/206|c.94.1.1| HM:SCP:REP 6->117|1b9mA1|1.2e-21|43.8|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 92->302|1al3A_|2.1e-28|27.2|206/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 105 OP:NHOMOORG 55 OP:PATTERN -------------------------------------------------------------------- 11--5---------311----2---1----------1253-1--1--1-22-433--2------32B3723----------------------------------------------------------------------------------------------------------------------------------------------11----------------12--------------------------------------------------------------------------------------------------------------------------------------------1-----------1--11-----11--------------------1---------1---11---------------1--------1-----------------------------------------------1111-------111--------1---------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 279 STR:RPRED 92.1 SQ:SECSTR #####EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEcHHccTTccEEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTTTcEEEEccTTcccEEEEEEEETTccccH################### DISOP:02AL 1-3, 89-92, 301-303| PSIPRED cccccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEccccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHccHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcc //