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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55153.1
DDBJ      :             putative cholesterol oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  64/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.3.1d.16.1
:528 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   46->525 1mxtA PDBj 1e-78 40.3 %
:RPS:PDB   44->526 1cboA PDBj 9e-42 39.2 %
:RPS:SCOP  44->353 1b4vA1  c.3.1.2 * 5e-19 37.7 %
:RPS:SCOP  449->526 1tzlA1  c.3.1.2 * 2e-08 27.4 %
:HMM:SCOP  40->328 1o5wA1 c.3.1.2 * 1e-13 19.7 %
:HMM:SCOP  346->471 1coyA2 d.16.1.1 * 6.7e-46 55.2 %
:RPS:PFM   466->518 PF05199 * GMC_oxred_C 5e-05 48.1 %
:HMM:PFM   420->518 PF05199 * GMC_oxred_C 1.4e-16 29.6 98/145  
:HMM:PFM   134->328 PF00732 * GMC_oxred_N 0.0005 19.2 177/298  
:HMM:PFM   48->76 PF01266 * DAO 2.1e-05 37.9 29/358  
:BLT:SWISS 46->525 CHOD_STRS0 4e-78 40.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55153.1 GT:GENE BAD55153.1 GT:PRODUCT putative cholesterol oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 327692..329278 GB:FROM 327692 GB:TO 329278 GB:DIRECTION + GB:PRODUCT putative cholesterol oxidase GB:PROTEIN_ID BAD55153.1 LENGTH 528 SQ:AASEQ MAALFAGAGSLLGGRPAAADPVWNGLFREWVPEIFAPLPDPPEHSPALVVGSGFGAAVTALRLAEAGVATTVLERGSRWPNDPWREIFTGDDLPDGRGFWHRTSFTGVTKVPMHFASFGGVLDCTEYPGIDVWRAAAVGGGSVIFTGAMIAPQRKLFDEVFRGSVDYDELDRVYYPRVRQMLRLSTMPADIYHSAPFTHSRAWDEQVRKAGYEPQPNDSIFTWDILRGELAGATRPSATVARSNLGNSNGAKFDLNQNYLKYAQDTGKAAVFPGHRVDAIAQESGGRYAVTVTKLAPTGDVLATRTLTCDRLFLGAGSIGTSELLVRAQATGALPNLNEHVGDGWGTNGDVVLARGASSLTGLGQGVPSASRIYDETDAPVTLESWYIPGIPVETGALASLGMVLDPTRTRFGYNAADGRVGLSWDRVNRDQVVAAARTVDQRIAERAGSLVGYGPIGYDANALFTAHPLGGAVLGKATDGYGRVHGHPGLYVMDGAAIPGSTATVNPSLTITALAERNIERIIRDGR GT:EXON 1|1-528:0| BL:SWS:NREP 1 BL:SWS:REP 46->525|CHOD_STRS0|4e-78|40.3|476/546| SEG 2->14|aalfagagsllgg| BL:PDB:NREP 1 BL:PDB:REP 46->525|1mxtA|1e-78|40.3|476/498| RP:PDB:NREP 1 RP:PDB:REP 44->526|1cboA|9e-42|39.2|479/498| RP:PFM:NREP 1 RP:PFM:REP 466->518|PF05199|5e-05|48.1|52/140|GMC_oxred_C| HM:PFM:NREP 3 HM:PFM:REP 420->518|PF05199|1.4e-16|29.6|98/145|GMC_oxred_C| HM:PFM:REP 134->328|PF00732|0.0005|19.2|177/298|GMC_oxred_N| HM:PFM:REP 48->76|PF01266|2.1e-05|37.9|29/358|DAO| GO:PFM:NREP 1 GO:PFM GO:0016614|"GO:oxidoreductase activity, acting on CH-OH group of donors"|PF05199|IPR007867| RP:SCP:NREP 2 RP:SCP:REP 44->353|1b4vA1|5e-19|37.7|308/366|c.3.1.2| RP:SCP:REP 449->526|1tzlA1|2e-08|27.4|73/379|c.3.1.2| HM:SCP:REP 40->328|1o5wA1|1e-13|19.7|234/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 346->471|1coyA2|6.7e-46|55.2|125/132|d.16.1.1|1/1|FAD-linked reductases, C-terminal domain| OP:NHOMO 90 OP:NHOMOORG 65 OP:PATTERN -------------------------------------------------------------------- -11-2------1-121-11-11111111111111115322-113----------1-----23--2213121----------------------------------------------------------------------------------------1------1--1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------11--------1--1------1-------1------------------------2---------------------------3--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------11-11----1---------------------------------------------------------------1122------------------------------------------------- -------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 501 STR:RPRED 94.9 SQ:SECSTR #########################cccccccccccGGTTTcEEEEEEEEcccHHHHHHHHHHHHTTccEEEEEcccccccccTTcccccTTcccGGGccccccHHHHGGGccccccccccEEEEEccccEEEEEccTTGGGTTcccccccccHHHHHHHcTTccHHHHHHTHHHHHHHHHHTcccccHHHHHHcGGGHHHHHHHHHHHTTccEEEccccccHHHHHHHHTTccccccGGGTccTTccccccccTTTTHHHHHHHTTcEEEEEcEEEEEEEEcTTccEEEEEEEEcTTccEEEEEEEEEEEEEEccHHHHHHHHHHHHHHTTccTTccTTTTcccccTTEEEEEEEccTTccccccccEEEEEccccTTcEEEEEEccTTccccccEEEEEEEEccccccEEEEETTTTEEEEEccGGGGHHHHHHHHHHHHHHHHHHTcEEccccccccEEccEEccccccccTTTTccTTcccTTcccEEEccGGGccccccccccHHHHHHHHHHHHHHHHHH## DISOP:02AL 1-3| PSIPRED cHHHHHHHHHHHcccccccccHHHHcccccccHHHcccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccHHHHccEEEccccHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEccEEEEEEEEcccEEEEEEEEEccccEEEEEEEEEccEEEEEcccHHHHHHHHHHHcccccccccHHHccccccccccEEEEccccccccccccEEEEEEcccccccEEEEEEcccccccHHHHEEEEEccccccccEEEccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccHHHcccccEEEEccccccHHHHccccccEEccccEEEEccHHcccccccccHHHHHHHHHHHHHHHHHHHcc //