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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55165.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  226/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
e.3.1
:439 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   91->216 1ci9A PDBj 1e-09 36.0 %
:RPS:PDB   49->324 2dd0F PDBj 2e-26 16.0 %
:RPS:SCOP  48->325 1ci8A  e.3.1.1 * 2e-27 25.3 %
:HMM:SCOP  45->336 2drwA1 e.3.1.1 * 3.2e-48 26.3 %
:RPS:PFM   87->216 PF00144 * Beta-lactamase 3e-11 34.1 %
:HMM:PFM   79->325 PF00144 * Beta-lactamase 5.1e-30 26.6 233/329  
:BLT:SWISS 89->222 PBPX_BACSU 9e-12 31.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55165.1 GT:GENE BAD55165.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(337956..339275) GB:FROM 337956 GB:TO 339275 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55165.1 LENGTH 439 SQ:AASEQ MAAVTLVAGALAGAAQAAPDPGYAECAVTSGRTPQRAAPEAAGFDSGRLDEALRFAAERNRFNVQVFRHNCLVGEGPNNAHTGHVPWNIWSSTKSVVSLLAGMAAERGLLDLHAPIDRYLPAGLGDAEHRSITVEDLLTETSGMRVGVLTEGITGVIPIDPHSAVQALGVPLANPPGTVFSYSQRNVDLLAYVIELALGEPLQQFAQRELFDPLGIAREDYYWARDRAGNTYGYAHLMLPPDDFAKLGLLVADDGRWGAQQIVPADYLRQARTPSPANRCYGYLFWLGPGCAEIPAFLPSGVYAMAGLGLQNVFVLPELDLVVVWTGAFGNVSAHGVQGIVQNTGELPWEFFRKLFAAMHEPPVPDPGPYVEPPLRTDPSRYVDNSLLLAVFGVGPAAYPGCNVFSCLNYELAAPFADAPPGCYVLACLGPDPRTPGIR GT:EXON 1|1-439:0| BL:SWS:NREP 1 BL:SWS:REP 89->222|PBPX_BACSU|9e-12|31.7|126/391| TM:NTM 4 TM:REGION 1->23| TM:REGION 281->303| TM:REGION 308->330| TM:REGION 384->406| SEG 2->18|aavtlvagalagaaqaa| SEG 361->374|eppvpdpgpyvepp| BL:PDB:NREP 1 BL:PDB:REP 91->216|1ci9A|1e-09|36.0|125/377| RP:PDB:NREP 1 RP:PDB:REP 49->324|2dd0F|2e-26|16.0|269/333| RP:PFM:NREP 1 RP:PFM:REP 87->216|PF00144|3e-11|34.1|129/324|Beta-lactamase| HM:PFM:NREP 1 HM:PFM:REP 79->325|PF00144|5.1e-30|26.6|233/329|Beta-lactamase| RP:SCP:NREP 1 RP:SCP:REP 48->325|1ci8A|2e-27|25.3|277/377|e.3.1.1| HM:SCP:REP 45->336|2drwA1|3.2e-48|26.3|274/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 356 OP:NHOMOORG 239 OP:PATTERN ---------------------------------------------------11--------------- --3-3---------11-11-11--1111111-11112-11-1-1211--11-1--------1-11-1211------------1----------2------122342222----------------------------1111---1-1--1--------11------1---2-------------1-11-----1111111111111111--11-1112-------1-----23---------------------------------------------------------------------------------------------------------11------------1---111----1---------3-12115-------58911-2231222212222123---2--1-2222-2332111111121-345--111121-3------------1--1------------------------------34-4--11-11111112----11--------11-111---32------2--16121---------------1-----------------------------1-111-------------------------------------2--------1--------1-2---------------------------------------------------1-1--1-------------------------------------------1------------11-----------------------1-1-3232111111111-111-----------1--------1---1-----1-----------111111----------1-----------------------------------11- ----------------1-------1------------1111-----------1----------------1----------------------1----------------------------------------------------------------------1--------------------2-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 335 STR:RPRED 76.3 SQ:SECSTR #########################cccccccccccccEEEccccccHHHHHHHHHHTTTccEEEEEcTTccccccTTEEccccccEEcGGGGHHHHHHHHHHHHHHTcccTTccGGGTcTTcGTcTTGGGccGGGGTTTccccccccTTccccccccccHHHHHHHHHHcccccTTcccccccHHHHHHHHHHHHHHTccHHHHHHHTTTGGGTcTcccccTTcccGGGTGGGTcEEEcHHHHHHHHHHHHTTccccHHHHHHHHTccEEcccccccEEEccccEEEEETTEETTEEEEEEEEEETTEEEEEEEETTTccEEEEEEcEEcccccccHHHEEccHHHHHHHTHHHHHHHT############################################################################### DISOP:02AL 436-439| PSIPRED cHHHHHHHHHHHHHcccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHcccEEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHccccccccccHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEccccccccccccEEEccHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccEEEEcccccccccccccccEEEEccccEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccHHHHcccccccccccccEEEEccccccccccccccccEEEEEccccccccccc //