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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55181.1
DDBJ      :             putative penicillin-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  828/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
d.11.1d.2.1e.3.1
:790 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   59->255 3dwkB PDBj 2e-24 36.2 %
:BLT:PDB   312->588 1mwrA PDBj 4e-06 25.9 %
:RPS:PDB   58->711 3dwkC PDBj 1e-74 21.2 %
:RPS:SCOP  59->274 2oluA1  d.2.1.10 * 3e-60 35.7 %
:RPS:SCOP  295->703 2bg1A1  e.3.1.1 * 8e-32 16.6 %
:RPS:SCOP  697->754 1k25A1  d.11.1.1 * 9e-08 20.8 %
:HMM:SCOP  237->687 2bg1A1 e.3.1.1 * 3.3e-68 32.5 %
:RPS:PFM   72->256 PF00912 * Transgly 3e-42 51.4 %
:RPS:PFM   396->613 PF00905 * Transpeptidase 8e-10 34.6 %
:RPS:PFM   698->755 PF03793 * PASTA 1e-05 44.8 %
:HMM:PFM   69->255 PF00912 * Transgly 7.2e-62 46.9 175/178  
:HMM:PFM   354->631 PF00905 * Transpeptidase 7.2e-26 27.5 258/304  
:HMM:PFM   697->754 PF03793 * PASTA 2.5e-11 39.7 58/63  
:BLT:SWISS 76->632 PBPG_BACSU 1e-37 29.7 %
:BLT:SWISS 692->756 PKN1_CORGL 4e-07 36.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55181.1 GT:GENE BAD55181.1 GT:PRODUCT putative penicillin-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(349637..352009) GB:FROM 349637 GB:TO 352009 GB:DIRECTION - GB:PRODUCT putative penicillin-binding protein GB:PROTEIN_ID BAD55181.1 LENGTH 790 SQ:AASEQ MSNVPITHTLAKLAGSCALAAVLVAGLLFPLAGGFGFVSNRAADAVDNVSAELVEGTVPAVSTMVDAAGNPIAWLYEQRRFEVPSDRISNDMKLAIISIEDRRFAEHDGVDWQGTVRAFLTNTTSGEVQQGASTLDQQYVKNFQLLVVAKTDAERRAAIETTPARKIREIRMALTLDKELTKDEILTRYLNLVPFGNSSYGIQDAAQTYFGIDAADLNVPQAAMLAGMVQSSSKLNPYTNPQGVLDRRNTVLDTMIQNIPGRAEEFRKAKQEPLGVLPEPKGLPRGCIAANDRGFFCDYALQYLAEAGISREQIDKGGFLIRTTLDPAVQDSVKRAINDHAKPDLDHIAEVMSVVAPGQDSHPVLAMASSRTYGLNQDANETVQPQPFSMVGDGAGSVFKIFTTAAAMEKGLGINSQLDVPARFDAQGMGNGGARGCPPATYCVENAGRYKSPMSVTEALATSPNTAFVKLIQAVGVTPTVDMAVRLGMRSFTKPGTSGHGNQSLADMIKDQNLGSFTLGPVAINPLELSNVAATLASGGRWCPPSPIKEVIDRYGKPVPLTQQACEQVVEPGLANTLANAMSKDDTSGTAAGAAQAMGWGGLPMAGKTGTTESHRSSAFLGFTNSLAGAVYVYGDSPTPGEICSFPLRNCGSGDLFGGNEPARTWFSAVKGVVGNFPPPALPPLDDKYVRGANNAQVPDVVGMSQSEATTALVSAGFQVSAVNGSGPPPKGSVMSMAPNGSAIPGSVITIYISDGTQRQAPSPAAPAPAPNLPAPPPLPNIPLPPWWPR GT:EXON 1|1-790:0| BL:SWS:NREP 2 BL:SWS:REP 76->632|PBPG_BACSU|1e-37|29.7|498/691| BL:SWS:REP 692->756|PKN1_CORGL|4e-07|36.9|65/646| TM:NTM 1 TM:REGION 14->36| SEG 13->38|lagscalaavlvagllfplaggfgfv| SEG 589->602|gtaagaaqamgwgg| SEG 761->789|apspaapapapnlpappplpniplppwwp| BL:PDB:NREP 2 BL:PDB:REP 59->255|3dwkB|2e-24|36.2|185/621| BL:PDB:REP 312->588|1mwrA|4e-06|25.9|247/609| RP:PDB:NREP 1 RP:PDB:REP 58->711|3dwkC|1e-74|21.2|595/623| RP:PFM:NREP 3 RP:PFM:REP 72->256|PF00912|3e-42|51.4|173/178|Transgly| RP:PFM:REP 396->613|PF00905|8e-10|34.6|191/289|Transpeptidase| RP:PFM:REP 698->755|PF03793|1e-05|44.8|58/63|PASTA| HM:PFM:NREP 3 HM:PFM:REP 69->255|PF00912|7.2e-62|46.9|175/178|Transgly| HM:PFM:REP 354->631|PF00905|7.2e-26|27.5|258/304|Transpeptidase| HM:PFM:REP 697->754|PF03793|2.5e-11|39.7|58/63|PASTA| GO:PFM:NREP 6 GO:PFM GO:0003824|"GO:catalytic activity"|PF00912|IPR001264| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF00912|IPR001264| GO:PFM GO:0009274|"GO:peptidoglycan-based cell wall"|PF00912|IPR001264| GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| GO:PFM GO:0008658|"GO:penicillin binding"|PF03793|IPR005543| RP:SCP:NREP 3 RP:SCP:REP 59->274|2oluA1|3e-60|35.7|185/208|d.2.1.10| RP:SCP:REP 295->703|2bg1A1|8e-32|16.6|362/452|e.3.1.1| RP:SCP:REP 697->754|1k25A1|9e-08|20.8|53/61|d.11.1.1| HM:SCP:REP 237->687|2bg1A1|3.3e-68|32.5|366/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 2431 OP:NHOMOORG 835 OP:PATTERN -------------------------------------------------------------------- 333-322222222222222-23223422222233333344233322212224232112115523325644321222221131311111223213111--23333236415---------------2222212221222233---215333333223312122243224673111-11111-11232111124346666666666666665444446673434433222222443333333333333333333332223322323222233322222333333333333333333333333333333333333343333333331212111111211211211111131111322213333232521111212134-766412222554555545554544444444445-7777887765415554666566674534423443442331111111111112335------------2122121211112----1323424444468878655554664566663675467771122242444463342333222232222222222222442432133222222133333333333434434122131111121211111111111122443233322233333333233332322322--11213-1-11144323434444444444-4444444444444344444444334444444444444444443443332342143444444444411131111111113542422232313332322323333333333333334335444443444---------12223222223322244444443333333--135544551111111121--------------------------1-11111111--3 -------------1-----------------------------------------------------------------------------------------------------------------------------------------------------1--------------1------1--3--1--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 681 STR:RPRED 86.2 SQ:SECSTR #########################################################ccccEEEEcTTccEEEEEcccccccccGGGccHHHHHHHHHHHcGGGTTcccccHHHHHHTTTTTTTccccccccccHHHHHHHHHcccc####cccccHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccTTcccHHHHHHHHTccccTTccHHHHHHHHHGGGcHHHHcTTTcHHHHHHHHHHHHHHHHHcccHHHHHHHTTcccGGGcccccTTGGGcccccTTGGGHHHHHHHHHTTccccHHHHTTcTcEEEEcccHHHHHHHHHHHHHccccccTTEEEEEEEEETTTTTccEEEEEccTTccTTTcccTTTccEEcGGEEcGGGGGGHHHHTHHHHHHcccTTcEEEccccccccccTTGGGccccccccccccTTccccEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTccccccTTGGccccccccccHHHHTTcTTcEEcHHHHHHHHHHHTTTcEEEccccEEEEEcccccEEEEccccEEEcccHHHHHHHHHHHHTTccTHHHTcTTTTccccccccEEEEEEEEccTTHHEEEEcccEEEEEEEEEccccGGGTTcEGGGTTcEEHHHHHTHHHHHHHHHHHHHccccTccccccccTTEEEETTEEEETTcccccccccccGcEEEEcTTcccTTcccEEEEEEccEEEccc################################################ DISOP:02AL 1-2, 710-711, 726-748, 764-790| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccEEEEEEcccEEEEEcccccEEccHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcEEEcccccHHHHHHHHHHHcccHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEEEcccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEcccEEEcccccEEccccccccccccccccccccccEEHHHHHHHcccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccEEEcHHcccHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEEcccccccccccHHHHHHHHHHHHHHccccccHHHHHHccccccEEEEEcccccccccEEEEEEcccEEEEEEEEccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccc //