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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55190.1
DDBJ      :             putative endonuclease III
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  870/915 : Eukaryota  159/199 : Viruses  0/175   --->[See Alignment]
a.96.1
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->249 1p59A PDBj 2e-45 46.0 %
:RPS:PDB   63->251 2abkA PDBj 4e-46 36.0 %
:RPS:SCOP  63->250 1ornA  a.96.1.1 * 3e-62 45.7 %
:HMM:SCOP  46->258 1ornA_ a.96.1.1 * 1.4e-63 40.4 %
:RPS:PFM   80->212 PF00730 * HhH-GPD 5e-19 43.6 %
:HMM:PFM   80->214 PF00730 * HhH-GPD 3.1e-23 38.5 104/121  
:HMM:PFM   233->249 PF10576 * EndIII_4Fe-2S 2.1e-06 52.9 17/17  
:HMM:PFM   19->118 PF11719 * Drc1-Sld2 0.0003 12.0 100/441  
:BLT:SWISS 42->280 END3_MYCTU e-105 75.3 %
:PROS 233->249|PS00764|ENDONUCLEASE_III_1
:PROS 148->177|PS01155|ENDONUCLEASE_III_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55190.1 GT:GENE BAD55190.1 GT:PRODUCT putative endonuclease III GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 357795..358637 GB:FROM 357795 GB:TO 358637 GB:DIRECTION + GB:PRODUCT putative endonuclease III GB:PROTEIN_ID BAD55190.1 LENGTH 280 SQ:AASEQ MRVSPSSAVESGSSSAGAGSAAPSAGAAESAEPKRKTRSRQAETKLGLVRRARRMNRTLARAFPDAHCELDFTTPLELAVATILSAQCTDERVNMTTPALFARYPDARAYAEANRTELEEYIRPTGFYRNKTSSLIGLGQALVEKYDGEVPHTLEELVQLPGIGRKTANVILGNAFDVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGELIERKDWTMLSHRVIFHGRRVCHSRRPACGACVLAKDCPSCGLGPVEPEAAAKLVKGPEREHLLGMVGL GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 42->280|END3_MYCTU|e-105|75.3|239/245| PROS 233->249|PS00764|ENDONUCLEASE_III_1|PDOC00615| PROS 148->177|PS01155|ENDONUCLEASE_III_2|PDOC00615| SEG 3->33|vspssavesgsssagagsaapsagaaesaep| SEG 50->62|rrarrmnrtlara| BL:PDB:NREP 1 BL:PDB:REP 63->249|1p59A|2e-45|46.0|187/214| RP:PDB:NREP 1 RP:PDB:REP 63->251|2abkA|4e-46|36.0|189/211| RP:PFM:NREP 1 RP:PFM:REP 80->212|PF00730|5e-19|43.6|133/144|HhH-GPD| HM:PFM:NREP 3 HM:PFM:REP 80->214|PF00730|3.1e-23|38.5|104/121|HhH-GPD| HM:PFM:REP 233->249|PF10576|2.1e-06|52.9|17/17|EndIII_4Fe-2S| HM:PFM:REP 19->118|PF11719|0.0003|12.0|100/441|Drc1-Sld2| GO:PFM:NREP 1 GO:PFM GO:0006284|"GO:base-excision repair"|PF00730|IPR003265| RP:SCP:NREP 1 RP:SCP:REP 63->250|1ornA|3e-62|45.7|188/214|a.96.1.1| HM:SCP:REP 46->258|1ornA_|1.4e-63|40.4|213/214|a.96.1.1|1/1|DNA-glycosylase| OP:NHOMO 1365 OP:NHOMOORG 1096 OP:PATTERN 221111111111111-1121112142252122111111111111112112222111111111111111 1221112211111111111-11111111111111111111111111111---111111--1111111111121111221111122222222112111--1121111112122222221111111111111111121344221112-113111122111111111112111111111111111121211111221222221221222112121111221122122111111121111111111111111111111111111-11111111111----2221111111111111111111111111111111111111111111111111111111111111111111211112112-11111211121111211112111112221112111111111122222222221-3323312311121111111111112111111111111111111111111111111111111111111111111111111111112211111111211111111111111111111111111111111111222111112111132211111111111111211211221111111121211112111123311111111111111111111111112111222222112212322211222222222222--1111211-11111212111111111111-111111111111111111111111212111111111111111121111111112111111111111111111112222122121111221222211112121222111121111211111121111111111111121111222222211111111111111111111111222211111111111-------------------------1111111111211 11-1121-3111121111-1111111-1111111111-11-1111111111111-11-1111111111-12-11122-2211111111-1-11111-1-111111111211-11112--11-111111-171--1-----11111-1-1-1--1111-1--112111111-11112122G2331-2--1-321131221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 204 STR:RPRED 72.9 SQ:SECSTR ##############################################################ccccccccccccHHHHHHHHHHTTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHcTTccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccGGGTTTHHHHHHHHHHHTcccccccGGGcTTGGGcccTTccHHT#TccccccE############# DISOP:02AL 1-46, 255-271| PSIPRED cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHcc //