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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55193.1
DDBJ      :             putative protease
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  333/915 : Eukaryota  29/199 : Viruses  0/175   --->[See Alignment]
b.47.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   214->355 1l1jA PDBj 6e-10 32.8 %
:RPS:PDB   209->355 2azoB PDBj 3e-13 13.9 %
:RPS:SCOP  201->380 1qy6A  b.47.1.1 * 4e-18 25.9 %
:HMM:SCOP  187->380 1sotA2 b.47.1.1 * 7.2e-34 29.6 %
:RPS:PFM   317->388 PF00944 * Peptidase_S3 7e-04 25.0 %
:HMM:PFM   7->146 PF02674 * Colicin_V 1.1e-15 20.0 140/146  
:HMM:PFM   220->362 PF00089 * Trypsin 3.1e-10 26.3 137/219  
:BLT:SWISS 219->381 DEGP3_ARATH 3e-13 35.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55193.1 GT:GENE BAD55193.1 GT:PRODUCT putative protease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 360166..361359 GB:FROM 360166 GB:TO 361359 GB:DIRECTION + GB:PRODUCT putative protease GB:PROTEIN_ID BAD55193.1 LENGTH 397 SQ:AASEQ MSSSVWLDVVVVVLALAAAASGWRQGAVASALAFLGVVLGAVAGILIAPHILVHVDEGRTRVLTGVLLIVVLVIVGEVAGMVLGRAARSGMRHPFTRSVDSIVGAALQAVAVLVIAWLLALPLATSSQPAIASAINGSRVLADVNEVAPNWLRKVPNEFSRLLNTSGLPDVIGPFGRAPIAAVEPPDPSVLASPVAASLQQSVLRIRGVAPSCQRALEGSGFVIAPERVMTNAHVVAGTTSVSVDTARGPLEASVVLFDPSKDIAVLAVPGLTAPVIPQASAAARSGDSAIVLGYPGGGPYTASAARVRETLDLTGPTIYRNGTVEREVYTVRGLVRAGNSGGPLVDTQGQVLGVVFGAAVTDDDTGYVLTLSEVRTELEAAPGATLPVDTGGCVLS GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 219->381|DEGP3_ARATH|3e-13|35.3|153/559| TM:NTM 4 TM:REGION 1->20| TM:REGION 30->52| TM:REGION 64->86| TM:REGION 100->122| SEG 9->20|vvvvvlalaaaa| SEG 59->76|rtrvltgvllivvlvivg| SEG 103->124|vgaalqavavlviawllalpla| BL:PDB:NREP 1 BL:PDB:REP 214->355|1l1jA|6e-10|32.8|137/226| RP:PDB:NREP 1 RP:PDB:REP 209->355|2azoB|3e-13|13.9|144/227| RP:PFM:NREP 1 RP:PFM:REP 317->388|PF00944|7e-04|25.0|72/137|Peptidase_S3| HM:PFM:NREP 2 HM:PFM:REP 7->146|PF02674|1.1e-15|20.0|140/146|Colicin_V| HM:PFM:REP 220->362|PF00089|3.1e-10|26.3|137/219|Trypsin| GO:PFM:NREP 3 GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF00944|IPR000930| GO:PFM GO:0006508|"GO:proteolysis"|PF00944|IPR000930| GO:PFM GO:0016020|"GO:membrane"|PF00944|IPR000930| RP:SCP:NREP 1 RP:SCP:REP 201->380|1qy6A|4e-18|25.9|166/216|b.47.1.1| HM:SCP:REP 187->380|1sotA2|7.2e-34|29.6|189/213|b.47.1.1|1/1|Trypsin-like serine proteases| OP:NHOMO 563 OP:NHOMOORG 367 OP:PATTERN --1-------------11----------------1-----------1--------------------- 2132111111111122222-2111122222222222211121121-1-2111213111--32211112211-----------2-------1--------------1-------------11111-------11---21121---134336222221121122313341122-1---111---11322211--11---------------12--11--------1--------1---------------------111111-111----1111111-1-------------------------------------11---111----1--------1-1--11-111-1---1----2211-12111112----1-2-1141----211--2--1-11-------------1221131--11-2-----21----211-13-1121121---------1--1-11-------------------------------2-13-----12223233222244342222222332122221122-2211-112-112111----------11--21------131----1----------222234-1--------------------1--1-------111-----1111-11------11--1--11-12-----------------------------------------------1------------------------------------------------------2-11----1----------1-----1-1111-----1111111111122------------------------11--------1111----2222-----------1-------------------------------------2- ----111--------------------------------1--------------------------------------------------------------------3--1---1-------------------1-1---------------------1-1-------------1-2181111-2253-24111---6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 50.9 SQ:SECSTR ##################################################################################################################################################################################cccccccccccHHHHHHHHHHcccccccccHHHHHHcTTccHHHHHHTTccccccccccccHHHHHHHHHTTTTTcccccccccEETTTTEEEEEEEEcTTcccccEEEEEcccccccccccTTcTTTTTTTcEEEEEEEccTTccGGGccccccEEEcccHHHHHHHHHHHHHHHHEEEEEEETTEEEEEEccHHHHHHHH################# DISOP:02AL 131-153, 175-190, 205-220| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccHHHHccHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHcccEEEEEcccccccccEEEEEEEEcccEEEEEHHHHccccEEEEEEcccEEEEEEEEEcccccEEEEEEccccccEEEccccccccccEEEEEEEccccccEEEEEEEEEEccccccccccccccEEEEEEEEcccccccccccEEcccccEEEEEEEEcccccccEEEEcHHHHHHHHHHHHHccccccccccccc //