Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55210.1
DDBJ : putative DNA polymerase III delta' subunit
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 875/915 : Eukaryota 10/199 : Viruses 0/175 --->[See Alignment]
a.80.1
c.37.1
:410 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB 46->192 1xxhB PDBj 2e-16 33.6 %
:RPS:PDB 79->224 3c58A PDBj 3e-14 4.2 %
:RPS:SCOP 15->221 1jr3A2 c.37.1.20 * 1e-33 28.4 %
:RPS:SCOP 307->391 1a5tA1 a.80.1.1 * 4e-13 23.0 %
:HMM:SCOP 15->227 1a5tA2 c.37.1.20 * 6.2e-49 31.4 %
:HMM:SCOP 324->409 1jr3A1 a.80.1.1 * 0.00012 27.7 %
:HMM:PFM 49->182 PF00004 * AAA 1.7e-07 22.3 112/130
:HMM:PFM 15->71 PF05496 * RuvB_N 0.00012 33.3 54/234
:HMM:PFM 349->388 PF09115 * DNApol3-delta_C 0.00013 30.8 39/119
:BLT:SWISS 46->190 HOLB_YERPE 3e-19 37.1 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55210.1
GT:GENE BAD55210.1
GT:PRODUCT putative DNA polymerase III delta' subunit
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 382796..384028
GB:FROM 382796
GB:TO 384028
GB:DIRECTION +
GB:PRODUCT putative DNA polymerase III delta' subunit
GB:PROTEIN_ID BAD55210.1
LENGTH 410
SQ:AASEQ MSEPAVRVSDVAGVFDRLVGQDAVESELTAAAVAARAGSVEGAMTHSWLFTGPPGSGRSVAALCFAAALQCTDPGTPGCGRCHACTTTMAGTHGDVRRVVPEGLSISTKEMREIVQIASRRPSTGRWQVVVIEDADRLTEAAGNVLLKVVEEPPERTVFLLCAPSVDPEDISVTLRSRCRHVHLVTPSVAAIATVLRERDGLDAKTAEWAASVSGGHVGRARRLATDAHARERRQRALALAAAAARPGAAYAAADELVKAADDEAKEMSAERDEREREELATALGAGGTGKGAASATRGSAGVLKELERRQKSRATRTGRDALDRALIDVAGLYRDALAVRFAAHDADAVTLTHPDMTEQIHDLADRVPPEGLLRSIDAVLACREALDLNVKPRFAVAAMVATLIAAQSG
GT:EXON 1|1-410:0|
BL:SWS:NREP 1
BL:SWS:REP 46->190|HOLB_YERPE|3e-19|37.1|143/340|
SEG 23->43|aveseltaaavaaragsvega|
SEG 228->254|aharerrqralalaaaaarpgaayaaa|
SEG 269->302|saerderereelatalgaggtgkgaasatrgsag|
SEG 396->407|avaamvatliaa|
BL:PDB:NREP 1
BL:PDB:REP 46->192|1xxhB|2e-16|33.6|143/364|
RP:PDB:NREP 1
RP:PDB:REP 79->224|3c58A|3e-14|4.2|144/269|
HM:PFM:NREP 3
HM:PFM:REP 49->182|PF00004|1.7e-07|22.3|112/130|AAA|
HM:PFM:REP 15->71|PF05496|0.00012|33.3|54/234|RuvB_N|
HM:PFM:REP 349->388|PF09115|0.00013|30.8|39/119|DNApol3-delta_C|
RP:SCP:NREP 2
RP:SCP:REP 15->221|1jr3A2|1e-33|28.4|197/240|c.37.1.20|
RP:SCP:REP 307->391|1a5tA1|4e-13|23.0|74/117|a.80.1.1|
HM:SCP:REP 15->227|1a5tA2|6.2e-49|31.4|204/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases|
HM:SCP:REP 324->409|1jr3A1|0.00012|27.7|83/126|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain|
OP:NHOMO 1440
OP:NHOMOORG 885
OP:PATTERN -------------------------------------------------------------------- 2211222222222222222-22222222222222222222222222222222222222222222222222222222222222221221111111111----1-1-11121111111111111112221111111112212222222224-2222122111111112233111211111211112121122212222222222222224222222222222232222222222222222222122222222222212122121112222222221--222222212122222222222222221122221-122222222222122212111112212121111111222112222222222222222222111122-11-1----111-11121111211111111111-1---11-1--1-222222222212122111212222212222222221222222211111--111111111-11111112-1--1221211111111111111111111111111111122221122222222222222111221221222222211111222222112111221122222222222222222111111111111111-111111111112222221211222222212222222222222-1222221-22221222222222222222-22222222222222222221112222121222222222222222222222221222222222222122211111211122122222222222222221111111211122222222221222212221111111112222222222222222222222222111111211111111111111111111111-11111--11111-1111111111111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----2--------------3316-32--1---- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
DISOP:02AL 1-4|
PSIPRED cccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccc
//
[GTOP]
