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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55210.1
DDBJ      :             putative DNA polymerase III delta' subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  875/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:410 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   46->192 1xxhB PDBj 2e-16 33.6 %
:RPS:PDB   79->224 3c58A PDBj 3e-14 4.2 %
:RPS:SCOP  15->221 1jr3A2  c.37.1.20 * 1e-33 28.4 %
:RPS:SCOP  307->391 1a5tA1  a.80.1.1 * 4e-13 23.0 %
:HMM:SCOP  15->227 1a5tA2 c.37.1.20 * 6.2e-49 31.4 %
:HMM:SCOP  324->409 1jr3A1 a.80.1.1 * 0.00012 27.7 %
:HMM:PFM   49->182 PF00004 * AAA 1.7e-07 22.3 112/130  
:HMM:PFM   15->71 PF05496 * RuvB_N 0.00012 33.3 54/234  
:HMM:PFM   349->388 PF09115 * DNApol3-delta_C 0.00013 30.8 39/119  
:BLT:SWISS 46->190 HOLB_YERPE 3e-19 37.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55210.1 GT:GENE BAD55210.1 GT:PRODUCT putative DNA polymerase III delta' subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 382796..384028 GB:FROM 382796 GB:TO 384028 GB:DIRECTION + GB:PRODUCT putative DNA polymerase III delta' subunit GB:PROTEIN_ID BAD55210.1 LENGTH 410 SQ:AASEQ MSEPAVRVSDVAGVFDRLVGQDAVESELTAAAVAARAGSVEGAMTHSWLFTGPPGSGRSVAALCFAAALQCTDPGTPGCGRCHACTTTMAGTHGDVRRVVPEGLSISTKEMREIVQIASRRPSTGRWQVVVIEDADRLTEAAGNVLLKVVEEPPERTVFLLCAPSVDPEDISVTLRSRCRHVHLVTPSVAAIATVLRERDGLDAKTAEWAASVSGGHVGRARRLATDAHARERRQRALALAAAAARPGAAYAAADELVKAADDEAKEMSAERDEREREELATALGAGGTGKGAASATRGSAGVLKELERRQKSRATRTGRDALDRALIDVAGLYRDALAVRFAAHDADAVTLTHPDMTEQIHDLADRVPPEGLLRSIDAVLACREALDLNVKPRFAVAAMVATLIAAQSG GT:EXON 1|1-410:0| BL:SWS:NREP 1 BL:SWS:REP 46->190|HOLB_YERPE|3e-19|37.1|143/340| SEG 23->43|aveseltaaavaaragsvega| SEG 228->254|aharerrqralalaaaaarpgaayaaa| SEG 269->302|saerderereelatalgaggtgkgaasatrgsag| SEG 396->407|avaamvatliaa| BL:PDB:NREP 1 BL:PDB:REP 46->192|1xxhB|2e-16|33.6|143/364| RP:PDB:NREP 1 RP:PDB:REP 79->224|3c58A|3e-14|4.2|144/269| HM:PFM:NREP 3 HM:PFM:REP 49->182|PF00004|1.7e-07|22.3|112/130|AAA| HM:PFM:REP 15->71|PF05496|0.00012|33.3|54/234|RuvB_N| HM:PFM:REP 349->388|PF09115|0.00013|30.8|39/119|DNApol3-delta_C| RP:SCP:NREP 2 RP:SCP:REP 15->221|1jr3A2|1e-33|28.4|197/240|c.37.1.20| RP:SCP:REP 307->391|1a5tA1|4e-13|23.0|74/117|a.80.1.1| HM:SCP:REP 15->227|1a5tA2|6.2e-49|31.4|204/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 324->409|1jr3A1|0.00012|27.7|83/126|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 1440 OP:NHOMOORG 885 OP:PATTERN -------------------------------------------------------------------- 2211222222222222222-22222222222222222222222222222222222222222222222222222222222222221221111111111----1-1-11121111111111111112221111111112212222222224-2222122111111112233111211111211112121122212222222222222224222222222222232222222222222222222122222222222212122121112222222221--222222212122222222222222221122221-122222222222122212111112212121111111222112222222222222222222111122-11-1----111-11121111211111111111-1---11-1--1-222222222212122111212222212222222221222222211111--111111111-11111112-1--1221211111111111111111111111111111122221122222222222222111221221222222211111222222112111221122222222222222222111111111111111-111111111112222221211222222212222222222222-1222221-22221222222222222222-22222222222222222221112222121222222222222222222222221222222222222122211111211122122222222222222221111111211122222222221222212221111111112222222222222222222222222111111211111111111111111111111-11111--11111-1111111111111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----2--------------3316-32--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4| PSIPRED cccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccc //