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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55223.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  808/915 : Eukaryota  61/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->407 1i29A PDBj 2e-39 32.9 %
:RPS:PDB   66->410 2ch2A PDBj 2e-19 9.5 %
:RPS:SCOP  56->407 1elqA  c.67.1.3 * 3e-42 21.1 %
:HMM:SCOP  38->410 1c0nA_ c.67.1.3 * 1e-82 38.5 %
:RPS:PFM   59->371 PF00266 * Aminotran_5 8e-38 39.7 %
:HMM:PFM   41->400 PF00266 * Aminotran_5 2.9e-87 38.8 358/371  
:BLT:SWISS 67->406 CSD_MYCTU 7e-47 34.7 %
:PROS 219->238|PS00595|AA_TRANSFER_CLASS_5
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55223.1 GT:GENE BAD55223.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 397033..398370 GB:FROM 397033 GB:TO 398370 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD55223.1 LENGTH 445 SQ:AASEQ MNRRDDVMTAVVDQTCAAFARVSGDDLRVPLVQGGTTTYANFDLAASAPALATVADRIQHLLPYYASVHRGAGYASRISTECYEAARGSVARFLDAGDDQVVVFTRNTTDSLNLLAGCVPGETVVLDIEHHANFLPWTTHGRRVVRAADTIEETLRRLVAELCARPAALLAVTGASNVTGEVLPLRRLAEIAHQCGARLLVDAAQLAPHRRISLRDTGIDYLACSGHKLYAPFGAGVLVGRRDWLDAAEPYLAGGGAVREVGVSDVAWAPAPQRHEGGSPNVLGAAAIAAACDALGAVDAEALVAHERQLTERLRAGLAAVPGCRVLRVFADSSDCVGIVAFTLDGYEPGHVAAYLSAEHGIGVRDGRFCAHPLLARLGVAAALRASVGVSTTSEQVDRLVGAVARLVERGTAWNYACTGGLWSPSPETRPLGGDSAGGAAPCLR GT:EXON 1|1-445:0| BL:SWS:NREP 1 BL:SWS:REP 67->406|CSD_MYCTU|7e-47|34.7|337/417| PROS 219->238|PS00595|AA_TRANSFER_CLASS_5|PDOC00514| SEG 40->55|anfdlaasapalatva| SEG 282->302|vlgaaaiaaacdalgavdaea| SEG 374->391|llarlgvaaalrasvgvs| BL:PDB:NREP 1 BL:PDB:REP 65->407|1i29A|2e-39|32.9|334/405| RP:PDB:NREP 1 RP:PDB:REP 66->410|2ch2A|2e-19|9.5|337/386| RP:PFM:NREP 1 RP:PFM:REP 59->371|PF00266|8e-38|39.7|305/359|Aminotran_5| HM:PFM:NREP 1 HM:PFM:REP 41->400|PF00266|2.9e-87|38.8|358/371|Aminotran_5| GO:PFM:NREP 1 GO:PFM GO:0008152|"GO:metabolic process"|PF00266|IPR000192| RP:SCP:NREP 1 RP:SCP:REP 56->407|1elqA|3e-42|21.1|337/381|c.67.1.3| HM:SCP:REP 38->410|1c0nA_|1e-82|38.5|364/0|c.67.1.3|1/1|PLP-dependent transferases| OP:NHOMO 1385 OP:NHOMOORG 903 OP:PATTERN 111-2-1---------1-------21112222--1--------45123-1111111-1111---2-23 1221112111111142211-12221211111112223222223322113111323-12--42412164442111122221332-----1111111111111422322422111111111111111-1-1-1-11-1333221-13612322221123221221121354431211111211111-111---111111111111111111221111111222211111111122111111111111111111112--11111-1111111111111111122211111111111111111111111111111111221112221-5233111112121112221211311233221-4422121122332-1-12-211111111131333111333231111111111112212212215122112323222133211111223221121111111112233332--21111111---------------1111111112-----1122111333311--3332113131121--111-1-11111111-12-122---------211122212-1--111111--2312314412212133221--111111-12--1-1-122---122221111112211111111111111111111-2131-------22221222222222222-2222222222222222222242332222221222222222212422212222122223222223211122222211112112311111111211111111121-1---521111211111111211111111111112222222221232211111111111111----1111111111111121111111-11111-1----1111-111-11111-111211 ------3-1------1111-111-11111-----------------111111----111----1----------1--------------1-11111-------------12----------------------------------------------------1----1--312-12118111212125-111142123 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 375 STR:RPRED 84.3 SQ:SECSTR #######################################################HHHHHHHHHcHTTcccccTTcHHHHHHHHHHHHHHHHHHTcccccEEEEcccHHHHHHHHHHHHTcEEEEEEccHHHHHHHHHHHHTTcEEccTTccccHHHHHHHHHHHcccEEEEEcEETTTTEEcccTTHHHHHHHTTcEEEEEcTTTcTTccccTTTTTccEEEccccccccccccEEEEEcHHHHHHTcccccccGGGcHHHHHHHTTcccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHTTTccccccccGGGccTTEEEEEccTTccHHHHHHHHHHHHccccccccGGGTTGGEEEEcTEEEEEccGGGccHHHHHHHHHHHHHHHHHccccEEcccEEEEEccTTcc############### DISOP:02AL 1-2, 444-445| PSIPRED cccHHHHHHHHcccccHHHHHHHccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHEEEEEccccccHHHHHHHHcccccEEEEEEcccccccEEEcHHHHHHHHHHcccEEEEEHHHHcccccccHHHccccEEEEccHHHccccccEEEEEccHHHHHcccEEEccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEEccccHHHHHHHHHHHccEEEEccccccHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccc //