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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55228.1
DDBJ      :             putative penicillin binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  103/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
e.3.1
:475 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   78->227,281->466 1w79B PDBj 7e-10 33.5 %
:RPS:SCOP  83->470 2ex2A1  e.3.1.3 * 5e-44 23.5 %
:HMM:SCOP  66->472 1w5dA1 e.3.1.3 * 6.8e-56 33.4 %
:RPS:PFM   280->451 PF02113 * Peptidase_S13 7e-18 45.0 %
:HMM:PFM   112->160 PF02113 * Peptidase_S13 7.8e-05 51.0 49/383  
:HMM:PFM   148->363 PF02113 * Peptidase_S13 2.7e-39 34.3 216/383  
:HMM:PFM   388->451 PF02113 * Peptidase_S13 1.9e-19 46.9 64/383  
:HMM:PFM   78->129 PF00768 * Peptidase_S11 8.9e-06 28.8 52/241  
:BLT:SWISS 78->227,281->466 DAC_ACTSP 2e-09 33.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55228.1 GT:GENE BAD55228.1 GT:PRODUCT putative penicillin binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 401254..402681 GB:FROM 401254 GB:TO 402681 GB:DIRECTION + GB:PRODUCT putative penicillin binding protein GB:PROTEIN_ID BAD55228.1 LENGTH 475 SQ:AASEQ MAARRRRRLWIGATAAATALLLAVAAVLLVVRPWTPEFRHGGLTVAAPPAPVKAFPRVTPATEAPAPSPAGVSTALAAAVTNPDLGAFTGIVTDAESGVTLWSADPGRPMIPSSTAKILTAAAALLALPADRRVATEVVVGSAPGELVLVGGGDPTLTAQPDGKGYYPNAARLSDLVDQIKASGRAVDTIVVDTSAFSGPTMARGWDPIDVPEGSIAPIEPVMIDGGRLSPLVEYSPRTTEPALDAGRALATALGLDPARVRAGTAAPDAAEVAAVHSAPLRDRLRDMMVHSDNVLAETIGREIALATGHEPSFTGAVAAVRATLEKAGFDVSGMDMHDTSGLSVDDRLPARLLDKVIATAAQPTGTALARPAGTKAEPESDRLAATLAPLLDQLPVAGATGSLAERYVTRNREGAGWVRAKTGTLTVASALVGYVLDRDGRVLTFALMSNDRPPEVSRPALDAIAGTLRNCGCS GT:EXON 1|1-475:0| BL:SWS:NREP 1 BL:SWS:REP 78->227,281->466|DAC_ACTSP|2e-09|33.5|306/538| SEG 13->31|ataaatalllavaavllvv| SEG 45->70|vaappapvkafprvtpateapapspa| SEG 116->130|akiltaaaallalpa| SEG 263->279|agtaapdaaevaavhsa| BL:PDB:NREP 1 BL:PDB:REP 78->227,281->466|1w79B|7e-10|33.5|306/465| RP:PFM:NREP 1 RP:PFM:REP 280->451|PF02113|7e-18|45.0|149/376|Peptidase_S13| HM:PFM:NREP 4 HM:PFM:REP 112->160|PF02113|7.8e-05|51.0|49/383|Peptidase_S13| HM:PFM:REP 148->363|PF02113|2.7e-39|34.3|216/383|Peptidase_S13| HM:PFM:REP 388->451|PF02113|1.9e-19|46.9|64/383|Peptidase_S13| HM:PFM:REP 78->129|PF00768|8.9e-06|28.8|52/241|Peptidase_S11| GO:PFM:NREP 2 GO:PFM GO:0004185|"GO:serine-type carboxypeptidase activity"|PF02113|IPR000667| GO:PFM GO:0006508|"GO:proteolysis"|PF02113|IPR000667| RP:SCP:NREP 1 RP:SCP:REP 83->470|2ex2A1|5e-44|23.5|366/456|e.3.1.3| HM:SCP:REP 66->472|1w5dA1|6.8e-56|33.4|368/0|e.3.1.3|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 106 OP:NHOMOORG 103 OP:PATTERN -------------------------------------------------------------------- 1---111111111111111-111111111111111111111111-1-112211111-1--11111111211111-111------------------------------1----------------------------------------------11----------11---------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------1----------1---------------------------------------------------------------------1----------111-------------------1-1-1--1111111---1--1-----------------------11-11-------------------------------------------------111--1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 332 STR:RPRED 69.9 SQ:SECSTR #############################################################################HHTTcGGGTcEEEEEEETTTccEEEEEcTTcccccGGGHHHHHHHHHHHHTcTTcccEEEEEEccccccEEEEEcccTTccHHH###########HHHHHHHHHHTTcEEccEEEEcTTcccccccTTccGGGTTcGGGccccccccEETEEEEEEEccccTTccc####################################cHHHHHHHHHHHTcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHTTcccTTccccccccccTTccccHHHHHHHHHHHHHTHTTc##########TTHHHHHHHcccTTcccHHHHccGGGTTcHHcTTcTTTTTcEEEEEEETTEEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHH######### DISOP:02AL 1-6, 51-58| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHcccccEEEEEEEccccEEEEEEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccc //