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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55257.1
DDBJ      :             putative Clp protease
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  892/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
a.174.1a.2.9c.37.1
:851 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->802 1qvrA PDBj e-158 49.0 %
:RPS:PDB   16->69 2at0X PDBj 2e-05 7.4 %
:RPS:PDB   166->290 3bbnG PDBj 8e-33 16.0 %
:RPS:PDB   264->384 1eaqB PDBj 1e-13 10.4 %
:RPS:PDB   387->594 1d0sA PDBj 7e-45 12.1 %
:RPS:PDB   650->805 1b94A PDBj 2e-31 14.6 %
:RPS:SCOP  5->140 1k6kA  a.174.1.1 * 7e-35 22.4 %
:RPS:SCOP  167->440,451->490 1qvrA2  c.37.1.20 * e-111 63.4 %
:RPS:SCOP  420->454 1qojA  a.2.9.1 * 3e-04 28.6 %
:RPS:SCOP  492->808 1ksfX3  c.37.1.20 * 9e-43 41.1 %
:HMM:SCOP  3->154 1qvrA1 a.174.1.1 * 2.1e-33 35.7 %
:HMM:SCOP  164->490 1qvrA2 c.37.1.20 * 1.5e-77 35.3 %
:HMM:SCOP  491->808 1qvrA3 c.37.1.20 * 2.4e-79 36.5 %
:RPS:PFM   16->66 PF02861 * Clp_N 3e-10 51.0 %
:RPS:PFM   94->141 PF02861 * Clp_N 2e-09 54.2 %
:RPS:PFM   210->342 PF00004 * AAA 1e-06 32.8 %
:RPS:PFM   542->711 PF07724 * AAA_2 8e-40 58.3 %
:RPS:PFM   720->801 PF10431 * ClpB_D2-small 2e-08 37.8 %
:HMM:PFM   541->713 PF07724 * AAA_2 3.9e-52 49.4 154/171  
:HMM:PFM   16->68 PF02861 * Clp_N 3.6e-20 45.3 53/53  
:HMM:PFM   92->142 PF02861 * Clp_N 2e-20 43.1 51/53  
:HMM:PFM   720->803 PF10431 * ClpB_D2-small 8.5e-28 45.2 84/89  
:HMM:PFM   210->325 PF00004 * AAA 5.4e-15 27.5 102/130  
:HMM:PFM   423->454 PF02151 * UVR 1.4e-09 40.6 32/36  
:HMM:PFM   189->226 PF01637 * Arch_ATPase 0.0002 28.9 38/234  
:HMM:PFM   440->577 PF00437 * GSPII_E 0.00083 19.8 121/282  
:BLT:SWISS 1->835 CLPC_MYCLE 0.0 89.6 %
:PROS 300->312|PS00870|CLPAB_1
:REPEAT 2|5->72|80->150
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55257.1 GT:GENE BAD55257.1 GT:PRODUCT putative Clp protease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 433460..436015 GB:FROM 433460 GB:TO 436015 GB:DIRECTION + GB:PRODUCT putative Clp protease GB:PROTEIN_ID BAD55257.1 LENGTH 851 SQ:AASEQ MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPVESGARGETGTPSTSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTINILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDDKIADARREKESAIDAQDFEKAARLRDKEKQLVAKRAEREKQWRSGDLDVVAEVDDEQIAEVLANWTGIPVFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTQDISKAVGLGFSQSNNEGSNYERMKLKVNDELKKHFRPEFLNRIDDVIVFHQLTNEQIVEMVDLMIGRVATQLKNKDMAIELTPTAKNLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFGEIGPGQTILVDVEGWDGEGSGEDAKFTFTGKAKLTKAPTEEKPEVVLTGAAEGPSEAAAGE GT:EXON 1|1-851:0| BL:SWS:NREP 1 BL:SWS:REP 1->835|CLPC_MYCLE|0.0|89.6|834/848| PROS 300->312|PS00870|CLPAB_1|PDOC00679| NREPEAT 1 REPEAT 2|5->72|80->150| SEG 291->302|gagaaegaidaa| SEG 496->506|lteeettrllr| SEG 839->850|gaaegpseaaag| BL:PDB:NREP 1 BL:PDB:REP 3->802|1qvrA|e-158|49.0|729/803| RP:PDB:NREP 5 RP:PDB:REP 16->69|2at0X|2e-05|7.4|54/184| RP:PDB:REP 166->290|3bbnG|8e-33|16.0|125/154| RP:PDB:REP 264->384|1eaqB|1e-13|10.4|115/122| RP:PDB:REP 387->594|1d0sA|7e-45|12.1|207/346| RP:PDB:REP 650->805|1b94A|2e-31|14.6|144/244| RP:PFM:NREP 5 RP:PFM:REP 16->66|PF02861|3e-10|51.0|51/52|Clp_N| RP:PFM:REP 94->141|PF02861|2e-09|54.2|48/52|Clp_N| RP:PFM:REP 210->342|PF00004|1e-06|32.8|116/123|AAA| RP:PFM:REP 542->711|PF07724|8e-40|58.3|151/160|AAA_2| RP:PFM:REP 720->801|PF10431|2e-08|37.8|82/90|ClpB_D2-small| HM:PFM:NREP 8 HM:PFM:REP 541->713|PF07724|3.9e-52|49.4|154/171|AAA_2| HM:PFM:REP 16->68|PF02861|3.6e-20|45.3|53/53|Clp_N| HM:PFM:REP 92->142|PF02861|2e-20|43.1|51/53|Clp_N| HM:PFM:REP 720->803|PF10431|8.5e-28|45.2|84/89|ClpB_D2-small| HM:PFM:REP 210->325|PF00004|5.4e-15|27.5|102/130|AAA| HM:PFM:REP 423->454|PF02151|1.4e-09|40.6|32/36|UVR| HM:PFM:REP 189->226|PF01637|0.0002|28.9|38/234|Arch_ATPase| HM:PFM:REP 440->577|PF00437|0.00083|19.8|121/282|GSPII_E| GO:PFM:NREP 6 GO:PFM GO:0005515|"GO:protein binding"|PF02861|IPR004176| GO:PFM GO:0019538|"GO:protein metabolic process"|PF02861|IPR004176| GO:PFM GO:0005515|"GO:protein binding"|PF02861|IPR004176| GO:PFM GO:0019538|"GO:protein metabolic process"|PF02861|IPR004176| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 4 RP:SCP:REP 5->140|1k6kA|7e-35|22.4|134/142|a.174.1.1| RP:SCP:REP 167->440,451->490|1qvrA2|e-111|63.4|278/357|c.37.1.20| RP:SCP:REP 420->454|1qojA|3e-04|28.6|35/46|a.2.9.1| RP:SCP:REP 492->808|1ksfX3|9e-43|41.1|292/306|c.37.1.20| HM:SCP:REP 3->154|1qvrA1|2.1e-33|35.7|143/0|a.174.1.1|1/1|Double Clp-N motif| HM:SCP:REP 164->490|1qvrA2|1.5e-77|35.3|326/0|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 491->808|1qvrA3|2.4e-79|36.5|310/315|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2986 OP:NHOMOORG 1081 OP:PATTERN ----------------------------------1-----1--11--2-1------------------ 2382622244222253222-242223222222333346A7263332222222363232225422348554223223222224322222432312223--2232224232222222222222222433333333333444452226234334442233333333333754573333333333333332233123222222222222222222222222233322223333432153333323333333332222333334333334433444543533333363333344333333333333333333334333543333333332243222222223222334222233421222222212211111112213332222422222233232222222322222222223-24224432232233332342222232222234323322233333333333322222222222222--11111121111112122-2223233324755356557777566888837634555322323323223322422232322322222222222233222222232332222111122131335398222112222222222222222222122223334434222322222232222222222331-22222------24233232333244443-3123223325343222223433336532433432333333332422222232-3777777477761122222222222236331111211111111113333333222428888344454344343311111111124343333333444322324224452222222233333322222212331----1-11111111111111--1112223332233242 33-1223-94212222322222222222232222222222322222222322222222223223222222222232213222122222-2823223222223134412B321121-11111111311313B1-212111121111111-111121-2121--1212-------3145B5t44454B9CO3BB4653423 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 807 STR:RPRED 94.8 SQ:SECSTR GGccccHHHHHHHHHccccTTccHHHHTEEEEEEEEEEEEccGGHTcccTTccHHHHccEEEEcccEEEEEEccGcHHHHHHHTccccccccccTTccHHHHTEEEEEEEEEEEEccGGGcccccEEEEEEEEETTEEEEEEEEEcTTTHHTcccEEEEEEEEEEcccTTTcHHHHHHTTccccccccccHHHHHHHHHHHHHHTTccccEEEcTTccHHHHHHHHHHccTTTcTTTccEEEEEEcccccHHHHHHHHHHHTHHHHHHHHHHHTcTTcccEEEEEEEEGGGGTccTTcccTTTEEEccTTccEEEEEETTcTccEEEEccccEEEEccccccEEEEEccTTEEEEEETTTTEEEEEEEccccccEEEEEETTEEEEcHHHHHTcccccHHHHHHHHHHHHTccccTTTTTHHHHHHHHHHTcGGGTTcccccEEEEEEEEEccGGGGGTcccccTTHHHHHHHHHHHTccHHHHHHHHTTcEEEEccccccTTcEEcccccccccTTTcccccHHHHHHHHHHHHHHHHHTTTEEEEEEEEEcTTTHHHHHHHHHHHHTccHHHHcccTTTEccGGGHHHHHHHTTcEEEEEETTTccEEEEEEcccccEEEEEEETTTTEEEEEETTcEEEEEEEcTTTHHHHHHHTcccHHHHHHHHHHHTccccHHHHHHHHHHHHHTTcHHHHHHHHHHcGGGTTccHHHHHHHHTcccccccccHHHHHHHHHHHHccHHHHHHHHHccccTTTGGGcccccHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHTTGGT############################################ DISOP:02AL 69-79, 143-170, 413-415, 418-419, 430-432, 435-437, 455-474, 818-851| PSIPRED ccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccHHHHHHccccccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHccccHHHcccEEEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHcHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEEEcHHHccHHHHHHHHHHHcccccccccccEEEcccEEEEEEccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHccEEEccccccccccccHHHHHHHcccccccccccccc //