[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55270.1
DDBJ      :             putative hydrolase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  213/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:249 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->243 3bf7B PDBj 2e-13 32.2 %
:RPS:PDB   1->245 3e3aB PDBj 3e-34 25.7 %
:RPS:SCOP  2->246 1mt3A  c.69.1.7 * 1e-27 19.2 %
:HMM:SCOP  1->243 1ehyA_ c.69.1.11 * 1.4e-45 30.0 %
:RPS:PFM   38->225 PF00561 * Abhydrolase_1 4e-11 34.4 %
:HMM:PFM   38->125 PF00561 * Abhydrolase_1 1.5e-12 30.6 85/231  
:HMM:PFM   185->231 PF00561 * Abhydrolase_1 0.00012 29.8 47/231  
:HMM:PFM   9->51 PF12146 * Hydrolase_4 4.8e-06 30.2 43/79  
:BLT:SWISS 4->245 YTXM_BACSU 3e-14 29.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55270.1 GT:GENE BAD55270.1 GT:PRODUCT putative hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 444839..445588 GB:FROM 444839 GB:TO 445588 GB:DIRECTION + GB:PRODUCT putative hydrolase GB:PROTEIN_ID BAD55270.1 LENGTH 249 SQ:AASEQ MLYDEGGAGAPILLLHGLMGSARTWAGHLDWLRGHGHVYTFDAAGHGRPAPPELTTEAFVADLAEATAGIGEPMAVIGHSMGGLHGWVFAAHHPERVRALVVEDIAPDFTGRTAADWAAMIESWPQPFPDADAVLSYFGPVAGRYFLNSFEHGPQGYRLHGSVATFRDISEEWGGRSFWAEWRAVRVPALLIEGEHTITPPGQMREMAAVNPHAEYVRVAGAGHLVHDEQPRRYRAEVARFLDRVLGAP GT:EXON 1|1-249:0| BL:SWS:NREP 1 BL:SWS:REP 4->245|YTXM_BACSU|3e-14|29.5|241/274| BL:PDB:NREP 1 BL:PDB:REP 10->243|3bf7B|2e-13|32.2|227/254| RP:PDB:NREP 1 RP:PDB:REP 1->245|3e3aB|3e-34|25.7|245/275| RP:PFM:NREP 1 RP:PFM:REP 38->225|PF00561|4e-11|34.4|180/211|Abhydrolase_1| HM:PFM:NREP 3 HM:PFM:REP 38->125|PF00561|1.5e-12|30.6|85/231|Abhydrolase_1| HM:PFM:REP 185->231|PF00561|0.00012|29.8|47/231|Abhydrolase_1| HM:PFM:REP 9->51|PF12146|4.8e-06|30.2|43/79|Hydrolase_4| RP:SCP:NREP 1 RP:SCP:REP 2->246|1mt3A|1e-27|19.2|245/293|c.69.1.7| HM:SCP:REP 1->243|1ehyA_|1.4e-45|30.0|243/293|c.69.1.11|1/1|alpha/beta-Hydrolases| OP:NHOMO 310 OP:NHOMOORG 239 OP:PATTERN -----------------------1----------------------------1--------------- -----------1--32211-11111311111123332121-1111-----1--111----111-111312------------------------------11--1-1--------------------1--1--1--31111---12---1-------------1--2-----------------1-------11--------1-----1--------11-1-----1111-21--------------------------------------------------------------------------------------------------------------------------------------------------------1-621---2--------------1------1--1---111-1---21-11----1222222111--------1--11111--------------------------------3---21--1---1-1------1-------121------12--------111------1----------------1--2------------------11----31-----------------------------1---11--1--12--1--1111-11---------1--------1-1---1---1-11111--1-1111111-1111-111---1111-----------------11--111------------------------------211----1----------2222211-----1111211322323-211----------1--1-----------1--------------1-111111-----------------------------------------------1- ---------------1----------------------------------1------11---------------------------------------------------611-12--1-11--11-1--------11--11----1-1-1-------1----------2----------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 249 STR:RPRED 100.0 SQ:SECSTR EEEEEEcccEEEEEEccTTccGGGGTTTHHHHHTTEEEEEEccTTcGGGTTccccHHHHHHHHHHHHHHTTccEEEEEETHHHHHHHHHHHHcGGGEEEEEEEcccccccHHHHHHHHHHHHTTccccHHHHHHHHHHHHccHHHHTcHHHHHHHHHccccccHHHHHHTTcccccccGGGGGGccccEEEEEETTccccHHHHHHHHHHcTTEEEEEETTccTTHHHHcHHHHHHHHHHHHHHcTccc DISOP:02AL 248-249| PSIPRED ccccccccccEEEEEccccccHHHHHHHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccc //