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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55277.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  274/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.34.18
:162 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  4->57 2eyqA1  b.34.18.1 * 6e-08 30.2 %
:HMM:SCOP  3->68 2eyqA1 b.34.18.1 * 5.6e-13 33.8 %
:RPS:PFM   3->56 PF02559 * CarD_TRCF 3e-10 50.0 %
:HMM:PFM   3->111 PF02559 * CarD_TRCF 1.9e-26 40.6 96/98  
:BLT:SWISS 2->144 YDEB_BACSU 5e-20 28.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55277.1 GT:GENE BAD55277.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 450578..451066 GB:FROM 450578 GB:TO 451066 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55277.1 LENGTH 162 SQ:AASEQ MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDRVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRREQDRGLSAGEKRMLAKARQILVGELALAEGTDDGKAETLLDEVLAAAS GT:EXON 1|1-162:0| BL:SWS:NREP 1 BL:SWS:REP 2->144|YDEB_BACSU|5e-20|28.7|143/153| RP:PFM:NREP 1 RP:PFM:REP 3->56|PF02559|3e-10|50.0|54/100|CarD_TRCF| HM:PFM:NREP 1 HM:PFM:REP 3->111|PF02559|1.9e-26|40.6|96/98|CarD_TRCF| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| RP:SCP:NREP 1 RP:SCP:REP 4->57|2eyqA1|6e-08|30.2|53/80|b.34.18.1| HM:SCP:REP 3->68|2eyqA1|5.6e-13|33.8|65/0|b.34.18.1|1/1|CarD-like| OP:NHOMO 313 OP:NHOMOORG 274 OP:PATTERN -------------------------------------------------------------------- -111111111111111111-1111111111111111112211111121122111111111111111111111111111------------------------------------------------------------------------------------------------------------11-----122212223122223222--21223------1------1-------------------------------------------------------------------------------------------111-1-------2-211--------1111--1133121-1111---1------111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111----------111111111111111----111111-----------------------------------------------------------------------11111111111111--------1-22222111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111-11-111--------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 81-84, 161-162| PSIPRED cccccccEEEEccccEEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEcccHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccc //