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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55281.1
DDBJ      :             putative tRNA/rRNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  866/915 : Eukaryota  83/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:324 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   103->322 1gz0H PDBj 6e-30 38.7 %
:RPS:PDB   176->323 3e5yA PDBj 4e-30 22.3 %
:RPS:SCOP  82->155 1gz0A2  d.79.3.3 * 1e-08 29.2 %
:RPS:SCOP  156->322 1gz0A1  c.116.1.1 * 3e-38 39.3 %
:HMM:SCOP  70->156 1gz0F2 d.79.3.3 * 2.1e-16 34.9 %
:HMM:SCOP  147->323 1v2xA_ c.116.1.1 * 3.3e-47 39.9 %
:RPS:PFM   83->155 PF08032 * SpoU_sub_bind 3e-08 43.1 %
:RPS:PFM   176->315 PF00588 * SpoU_methylase 4e-20 41.4 %
:HMM:PFM   176->315 PF00588 * SpoU_methylase 5.7e-40 38.8 139/142  
:HMM:PFM   83->158 PF08032 * SpoU_sub_bind 3.9e-19 37.3 75/76  
:BLT:SWISS 1->323 Y572_MYCA9 e-119 74.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55281.1 GT:GENE BAD55281.1 GT:PRODUCT putative tRNA/rRNA methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 453756..454730 GB:FROM 453756 GB:TO 454730 GB:DIRECTION + GB:PRODUCT putative tRNA/rRNA methyltransferase GB:PROTEIN_ID BAD55281.1 LENGTH 324 SQ:AASEQ MAGNSQRRGAVRKSGTKKGQVVGSGGKRRRGLEGRGATPPAEMRTKHPAAKRAAAKAKAAAKAGPRGAAGRPAGRKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTENDERLTESVKLAADTGISILEVPRTDLDRMSSNGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVESLNASVAAGVVLSEIARQRRR GT:EXON 1|1-324:0| BL:SWS:NREP 1 BL:SWS:REP 1->323|Y572_MYCA9|e-119|74.0|315/315| SEG 23->36|gsggkrrrglegrg| SEG 48->76|paakraaakakaaakagprgaagrpagrk| SEG 223->234|agaaarlpvara| BL:PDB:NREP 1 BL:PDB:REP 103->322|1gz0H|6e-30|38.7|212/242| RP:PDB:NREP 1 RP:PDB:REP 176->323|3e5yA|4e-30|22.3|148/156| RP:PFM:NREP 2 RP:PFM:REP 83->155|PF08032|3e-08|43.1|72/77|SpoU_sub_bind| RP:PFM:REP 176->315|PF00588|4e-20|41.4|140/143|SpoU_methylase| HM:PFM:NREP 2 HM:PFM:REP 176->315|PF00588|5.7e-40|38.8|139/142|SpoU_methylase| HM:PFM:REP 83->158|PF08032|3.9e-19|37.3|75/76|SpoU_sub_bind| GO:PFM:NREP 4 GO:PFM GO:0008168|"GO:methyltransferase activity"|PF08032|IPR013123| GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 82->155|1gz0A2|1e-08|29.2|72/76|d.79.3.3| RP:SCP:REP 156->322|1gz0A1|3e-38|39.3|163/166|c.116.1.1| HM:SCP:REP 70->156|1gz0F2|2.1e-16|34.9|86/87|d.79.3.3|1/1|L30e-like| HM:SCP:REP 147->323|1v2xA_|3.3e-47|39.9|168/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 1411 OP:NHOMOORG 950 OP:PATTERN -----------------------1-------------------------------------------- 2221121122221122222-22221122222111112111111112212221111121111213232111111111111112121111111122221-112223121211---------------3323334231422221---4132222222222222221322222221222222211123221111132111111111211111111111111122211221111112211111111111111111111221111112221122111121111111111111211222212222121111111111111222111222111122222222222221222222212221221222122111112212111122211132213111111111111122221222222-1111111112113222121111221111111111111111111111111111221111111111111111111111111111111111121111122211221111222111111222211111111111111111111112121221-1111112111221111122222122-1111111111111111111--11-----11-11111112--12112212232222231111122111121221221-11111------33333333333333232-3333333333333333333222332233323333333333333333333332133333333333311121111111112211111111111111111111111111111211111111111111111111-11-11112221111122122111112111111111111221111-1111111121111-2-111121111111--111111111111111-11 ----12------111-----111111----------------------111111--1111-1-----------------------1-1---------------1-1--3-1-1111----111111-2-121-1-2-1--11111-11--1--1-11--11--2-2-----111111213332-13--4-23213111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 75.3 SQ:SECSTR ##############################################################################EcHHHH#HHGGGccEEEEEcEEEHEEEETTccTcTTHHHHHHHHHHHTcEEEEEcHHHHHHHcTTcccTTEEEEEcccccccGTcEEEEEcccEEcTcEEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHTTccGGGEEEcccccccccccHHHHHHHHHHHHHHHTT# DISOP:02AL 1-80| PSIPRED ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccEEEEEHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcHHHEEcEEEEccHHHHHHHHHHcccEEEEEcccccccHHHccccccEEEEEccccccccHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHcc //