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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55285.1
DDBJ      :             putative ABC transporter membrane protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  25/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.22.1
:288 amino acids
:PSIPRED
:DISOPRED
:HMM:SCOP  15->278 1l7vA_ f.22.1.1 * 4.6e-25 30.0 %
:HMM:PFM   22->274 PF00950 * ABC-3 3.5e-43 32.0 253/258  
:BLT:SWISS 132->182 P29K_STRPA 4e-04 37.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55285.1 GT:GENE BAD55285.1 GT:PRODUCT putative ABC transporter membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(457262..458128) GB:FROM 457262 GB:TO 458128 GB:DIRECTION - GB:PRODUCT putative ABC transporter membrane protein GB:PROTEIN_ID BAD55285.1 LENGTH 288 SQ:AASEQ MDKLADVLGKMFDLSTTADLLSYDFVQQAVLAAALLGLLAGAIGPLIISRQMSFAVHGTSELSLTGAAAALLAGIGVGIGAIAGSVVAAVLFGLLGTRARERDSVIAVVLSFGLGLSVLFLWLGPERAGSKFSLLTGQVVAVGYSGLALLITCTVLVLAVLAAIYRPLLFASADPEVAVARGVPVRALAVVFAVLLGVTAAFGVQIVGALLVLALLITPAAAAAQVTANPVLATVLAIVFAELAAVGGILLSLAPGVPVSTFVTAISFAIYLLCRLIGARRRRSVAVR GT:EXON 1|1-288:0| BL:SWS:NREP 1 BL:SWS:REP 132->182|P29K_STRPA|4e-04|37.3|51/100| TM:NTM 8 TM:REGION 27->49| TM:REGION 70->92| TM:REGION 104->126| TM:REGION 140->162| TM:REGION 178->200| TM:REGION 204->226| TM:REGION 231->253| TM:REGION 258->279| SEG 29->48|avlaaallgllagaigplii| SEG 66->91|gaaaallagigvgigaiagsvvaavl| SEG 108->124|vvlsfglglsvlflwlg| SEG 183->201|vpvralavvfavllgvtaa| SEG 203->233|gvqivgallvlallitpaaaaaqvtanpvla| HM:PFM:NREP 1 HM:PFM:REP 22->274|PF00950|3.5e-43|32.0|253/258|ABC-3| HM:SCP:REP 15->278|1l7vA_|4.6e-25|30.0|260/324|f.22.1.1|1/1|ABC transporter involved in vitamin B12 uptake, BtuC| OP:NHOMO 25 OP:NHOMOORG 25 OP:PATTERN -------------------------------------------------------------------- ------------1111111---111-1----1----1111---------11-111--------1111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 287-288| PSIPRED ccHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEEc //