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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55289.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  31/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:211 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->207 3bjbA PDBj 6e-17 37.2 %
:RPS:PDB   34->207 3bjbD PDBj 1e-20 28.8 %
:RPS:SCOP  31->91 2o7tA1  a.4.1.9 * 9e-14 31.1 %
:HMM:SCOP  27->103 2gfnA1 a.4.1.9 * 2.1e-15 40.3 %
:RPS:PFM   37->80 PF00440 * TetR_N 4e-06 50.0 %
:HMM:PFM   37->81 PF00440 * TetR_N 3.5e-19 51.1 45/47  
:HMM:PFM   112->127 PF10945 * DUF2629 0.00099 37.5 16/44  
:BLT:SWISS 28->108 BSCR_BACSU 3e-08 34.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55289.1 GT:GENE BAD55289.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(463036..463671) GB:FROM 463036 GB:TO 463671 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55289.1 LENGTH 211 SQ:AASEQ MASPSRSQPAAARPATVTTLSEDELSSAAQRERRKRILDATLALASKGGYDAVQMRAVAERADVAVGTLYRYFPSKVHLLVSALAREFEQFESKRKPLAGATPRERMHLLLTQITRMMQRDPLLTEAMTRAFMFADASAAAEVDRVGKVMDRVFARAMNDGEPDERQLAIARVISDVWLSNLVAWLTRRASATDVSDRLELTVDLLLGDKE GT:EXON 1|1-211:0| BL:SWS:NREP 1 BL:SWS:REP 28->108|BSCR_BACSU|3e-08|34.6|81/194| SEG 2->15|aspsrsqpaaarpa| SEG 131->141|afmfadasaaa| BL:PDB:NREP 1 BL:PDB:REP 27->207|3bjbA|6e-17|37.2|164/169| RP:PDB:NREP 1 RP:PDB:REP 34->207|3bjbD|1e-20|28.8|163/168| RP:PFM:NREP 1 RP:PFM:REP 37->80|PF00440|4e-06|50.0|44/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 37->81|PF00440|3.5e-19|51.1|45/47|TetR_N| HM:PFM:REP 112->127|PF10945|0.00099|37.5|16/44|DUF2629| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 31->91|2o7tA1|9e-14|31.1|61/78|a.4.1.9| HM:SCP:REP 27->103|2gfnA1|2.1e-15|40.3|77/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 51 OP:NHOMOORG 31 OP:PATTERN -------------------------------------------------------------------- ----1---------22111-12--3111111223331433--------------------111---1111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 188 STR:RPRED 89.1 SQ:SECSTR #####################cccccccTTccccHHHHHHHHHHHHHccGGGcccHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHTTccccccccccTccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHccTTTcGHGGHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHc## DISOP:02AL 1-36| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc //