[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55295.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  135/915 : Eukaryota  112/199 : Viruses  0/175   --->[See Alignment]
c.150.1c.95.1
:398 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   142->388 2c7yA PDBj 7e-10 14.7 %
:RPS:SCOP  133->310 2ebfX2  c.150.1.2 * 1e-05 4.7 %
:HMM:SCOP  10->243 1wdkC1 c.95.1.1 * 9.7e-25 26.2 %
:HMM:SCOP  243->397 1wdkC2 c.95.1.1 * 1.1e-10 26.4 %
:HMM:PFM   35->115 PF00108 * Thiolase_N 0.00017 27.2 81/264  
:BLT:SWISS 136->386 Y793_METTH 9e-27 33.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55295.1 GT:GENE BAD55295.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 469645..470841 GB:FROM 469645 GB:TO 470841 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55295.1 LENGTH 398 SQ:AASEQ MTSKSPADRSPLSGRAAIVGIGATDFSKESGRSELRLAAEAVHAALADAGLTAADVDGLTTFTMDNNTQAAVARATGIPQLTFFSHIGYGGGAACATVQQAAMAVATGVAEVVVAYRAFNERSVSRFGQFSTALATAPTSSGIDAGWSYPHGLGTPAAQVAMVARRYMHVYGATSEDFGRVAVADRKHAAVNPDAFFYGKPITLEDHQRSRWIAEPLHLLDCCQESDGGVAIVVTSVERARDLPQKPAVIVGAAQGSGADQYVMTSYYRDAMTGLPEMGLVGQQLWAQSGLGPQDMQAAILYDHFTPFVLMQLEELGFCGRGEARDFIADGAIEHGGRLPLNTHGGQLGEAYIHGMNGITEAVRQIRGTSVNQVEGLANIVVTAGTGVPTSGLVLSAG GT:EXON 1|1-398:0| BL:SWS:NREP 1 BL:SWS:REP 136->386|Y793_METTH|9e-27|33.1|245/383| SEG 35->54|lrlaaeavhaaladagltaa| SEG 90->115|gggaacatvqqaamavatgvaevvva| RP:PDB:NREP 1 RP:PDB:REP 142->388|2c7yA|7e-10|14.7|218/391| HM:PFM:NREP 1 HM:PFM:REP 35->115|PF00108|0.00017|27.2|81/264|Thiolase_N| RP:SCP:NREP 1 RP:SCP:REP 133->310|2ebfX2|1e-05|4.7|171/219|c.150.1.2| HM:SCP:REP 10->243|1wdkC1|9.7e-25|26.2|221/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 243->397|1wdkC2|1.1e-10|26.4|125/128|c.95.1.1|2/2|Thiolase-like| OP:NHOMO 860 OP:NHOMOORG 313 OP:PATTERN 331-1146656577651152311A32223134111111111111111111111111111111331-11 --1-5---------8PB55-5D--98555556HCID4EBE-E1B--------111--1--226--216-61-----------------------------------------------------------------11111---1----------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------1-----------6112-------34611154652-----------------2--1-6--111-----1--12--1-1------12--------1-------------------------------------31D3--D767-1122--------2-------1-B1DBB-1---11-221-3249--1----------------51--926------------1--1-1--------1----------------------------------1--2-------12------2---------------------------------------------------------------------------------------------------------------------1---------------------------1111121----------------------------------------------------111111------------------------------------------------- ------1-212----122121112122111111111221212211111121111-11111111--------------------------1--2-------1-1111-2--111111--211-1211-3-392-312--11--2112-1-11-22-11132241211121121121-------------11--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 262 STR:RPRED 65.8 SQ:SECSTR ###################################################################################################################HHHHHHHcGGGcTTHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTTccEEETTccTTccHHHHHTcccTTcccccccccccEEEEEEEEEEEHHHHHHHTcccEEEEEEEEEEccGcccccccTTcGGTTcHHHHHHHHHHHHHTTccGGGccEEEEccccHHHHHHHHHHHTccGGHc###########GGGGGGccTTccHHHHcccGGGHHHHHHHHHHHHHcTTccEEEEEEEccTTEEE########## DISOP:02AL 1-9, 122-132| PSIPRED cccccccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccHHHccEEEEEEccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHcccccccccHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHcccccccEEEEEEEcHHHHHHccccEEEEEEEEEEEccccccccccccHHHcccccHHHHHHHHHHHHcccHHHccEEEEEcccHHHHHHHHHHcccccccHHHHHHHcccccccccEEEcccccHHHcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHccc //