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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55297.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:194 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->63 2qkoB PDBj 7e-07 40.7 %
:RPS:PDB   5->70 2dt5A PDBj 9e-08 9.1 %
:RPS:SCOP  3->71 3c07A1  a.4.1.9 * 1e-08 33.3 %
:HMM:SCOP  2->80 2fbqA1 a.4.1.9 * 2.4e-10 21.5 %
:HMM:PFM   10->54 PF00440 * TetR_N 2.7e-08 26.7 45/47  
:BLT:SWISS 7->70 UIDR_SHIFL 1e-04 26.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55297.1 GT:GENE BAD55297.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(471339..471923) GB:FROM 471339 GB:TO 471923 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55297.1 LENGTH 194 SQ:AASEQ MSTDDRRTQIVATAVDLIADAGIRALTHRALDRALALPAGSASYYFRTRRALLAGVVDHIAERSRADFREAGLTASDDVDAVADGIGNWLDDLLAARRAQLLVRHALILELGADTELRERLAAGLFAVERVRELFAAWGIGDPHRAALDFVAVLEGAVFDRFAGHRRALVAGTAESRAQLTGLVTAYLRGVRGR GT:EXON 1|1-194:0| BL:SWS:NREP 1 BL:SWS:REP 7->70|UIDR_SHIFL|1e-04|26.6|64/196| SEG 90->107|lddllaarraqllvrhal| BL:PDB:NREP 1 BL:PDB:REP 5->63|2qkoB|7e-07|40.7|59/173| RP:PDB:NREP 1 RP:PDB:REP 5->70|2dt5A|9e-08|9.1|66/210| HM:PFM:NREP 1 HM:PFM:REP 10->54|PF00440|2.7e-08|26.7|45/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 3->71|3c07A1|1e-08|33.3|69/75|a.4.1.9| HM:SCP:REP 2->80|2fbqA1|2.4e-10|21.5|79/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 13 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- ---------------------1----------1---1121---1------------------1--11-1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 194 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTTTcEEHHHHHHHHHHTHTTTcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcGGGHHHHHHHHHHHHHHHHHHTTTccTccHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHHTcccccc DISOP:02AL 1-4| PSIPRED ccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccc //